Taylor Reiter

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Taylor Reiter

Taylor Reiter

@ReiterTaylor

Scientist @ArcadiaScience. @Harvard, @ucdavis, @CUAnschutz alum. Computational biologist and sequencing data enthusiast.

Philadelphia, PA Katılım Ekim 2012
342 Takip Edilen811 Takipçiler
Eric Franzosa
Eric Franzosa@efranzosa·
@ReiterTaylor Nice work! May I ask how Fig. 1 from the manuscript was assembled? That's one of the cleanest-looking workflow diagrams I've seen.
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Taylor Reiter
Taylor Reiter@ReiterTaylor·
Introducing peptigate (peptide+investigate), a workflow that predicts and annotates peptides from transcriptome assemblies. It predicts small ORF-encoded peptides, cleavage peptides, and ribosomally synthesized and posttranslationally modified peptides.🧵 github.com/Arcadia-Scienc…
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Taylor Reiter
Taylor Reiter@ReiterTaylor·
This was a combined effort between many scientists @ArcadiaScience. @Gilad had the initial idea to use ESM embeddings to improve prediction accuracy, while @kchev implemented the code and performed some of the validation.
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Taylor Reiter
Taylor Reiter@ReiterTaylor·
Have you ever wondered whether a transcript is coding or noncoding? Or whether a predicted open reading frame encodes a functional protein? We recently had this question for very short open reading frames (sORFs). Enter the Python package plmutils 🧵 research.arcadiascience.com/pub/resource-p…
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