B-B4U

@tangming2005 How about CellTypist?

single-cell folks, what's the cell annotation tool do you recommend for immune cells and tumor cells? singleR? Seurat based label transfer? or sc-best-practices.org/cellular_struc… I still find myself using marker genes manually quite often

@tangming2005 Have u tried it? What do u think?

Executing single-cell data processing workflows with simpleaf combine-lab.github.io/alevin-fry-tut…

I wrote a Twitter today.

@OttoMatticBaby $BhuwanKhatri

@OttoMatticBaby $BhuwanKhatri

@hasantoxr AI

ChatGPT is a powerful AI Tool. But most people don’t know the best ways to use it. That’s why I prepared a free doc file for you. You will get: - 1000+ AI tools - 500+ No code tools - 1000+ GPT-4 prompts To get it, • Like • Reply "AI" • Follow me (so that I can DM)

5 websites for drawing scientific figures: 👇 🧵

Thanks to @naturemethods for introducing our latest 3D genomics visualization expanded to the current Browser platform. Thank all our users and Wang lab @twang5 members for suggestions and feedback! @WashUGenetics

You may know the GREAT tool (great.stanford.edu) which performs functional enrichment directly on genomic regions. Here the rGREAT package implements the GREAT algorithm. Theoretically it can work with any organism and any type of gene sets. Check jokergoo.github.io/rGREAT/article…

This `anno_GO_keywords()` function should be very useful. It automatically applies GSEA (ORA) on each gene list and adds word cloud annotation from GO keywords to the gene expression heatmap. See example at github.com/jokergoo/Keywo…

fastman: A fast algorithm for visualizing GWAS results using Manhattan and Q-Q plots biorxiv.org/content/10.110… ...thrilled to see there's a much better alternative to the qqman package I wrote and retired so many years ago! Thanks @kaustubhad & colleagues github.com/kaustubhad/fas…

@tangming2005 @marenbuettner youtube.com/playlist?list=…

Excited to share our integrated Human Lung Cell Atlas - combining 46 datasets of the human respiratory system, we map >2.2m cells from 444 individuals across health&disease. Led by @SikkemaLisa, with @MC_Nawijn @Misharin_lab @MDLuecken & many others, thx! biorxiv.org/content/10.110…

I will be opening a position for a computational scientist @ImmunitasTx focusing on single cell analysis. feel free to DM me if you are interested. I will have the job link up soon.

Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day next Friday (3/4). All talks will be live-streamed (no registration required) at satijalab.org/scgd22

Check out this #protocol for exploration of cell-type expression modules in gene signatures from bulk #brain tissue #RNA-seq, from Dr. Lopez-Atalaya's and Dr. de la Prida labs @JPLopezAtalaya @LMPrida @NeuroAlc @InstitutoCajal @CSIC: star-protocols.cell.com/protocols/1386 Research @CellReports

CellRank for directed single-cell fate mapping | Nature Methods nature.com/articles/s4159… #Bioinformatics

Running a lab during the pandemic

Having a bit of fun messing with gggenes R package for plotting gene coords in R! cran.r-project.org/web/packages/g…

Hi postdocs! Come be my friends and collaborators! We are reviewing applications for 2-3 immunology (neuro, viro etc. included) faculty positions at UT Dallas. DM if you have questions. Here is the announcement: jobs.sciencecareers.org/job/574719/ass…