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DANIO-CODE@daniocode·4 Tem

The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet nature.com/articles/s4158…. In addition to the BioRxiv submission twitter.com/daniocode/stat… in this paper we added further resources and results. (1/n)

DANIO-CODE@daniocode

DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.110…

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ferencmueller@ferencmueller·26 Eki

Fantastic talk at @BCGB_UoB by @bogdanoviclab from @CABD_UPO_CSIC on DNA methylation during vertebrate development and evolution @daniocode #epigenetics #embryogenesis #daniocode

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Merlin Lange@Merlin_Lange·31 Ağu

One week ago we released zebrahub.org the @czbiohub #scRNAseq dataset of zebrafish development with a very intuitive explorer. The data is open access here doi.org/10.6084/m9.fig… In this #Thread I'm going to give you a tutorial on how to use #zebrahub 👇 1/n

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Loïc A. Royer 💻🔬⚗️@loicaroyer·24 Ağu

📡 Big day today! Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae. Portal: zebrahub.ds.czbiohub.org Dataset: doi.org/10.6084/m9.fig… 1/n

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Erin Jimenez@ErinJimenezPhD·22 Ağu

The deep learning model integrated information about enhancer activity (like ChIP-seq data, histone modification data, known motif sequences and actual vertebrate data from zebrafish @daniocode. We found patterns of transcription factor binding site enrichment 8/n

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Erin Jimenez@ErinJimenezPhD·22 Ağu

I’m proud to share my postdoctoral research in @SMBurgessLab identifying regeneration enhancers in zebrafish inner ears at single-cell resolution. 1/n

Cell Genomics@CellGenomics

A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish dlvr.it/SX2xBS

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Nathan Lawson@LawsonZFLab·5 Tem

Congrats to @ferencemueller and the @daniocode team on their @NatureGenet paper! nature.com/articles/s4158…. Incredibly valuable resource. Underscores collaborative spirit in #zebrafish community. Maybe @NIH and @ERC_Research can step up for phase 2 support?

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ZFIN@ZFINmod·5 Tem

Good to see this published and glad we could provide support.

DANIO-CODE@daniocode

The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet nature.com/articles/s4158…. In addition to the BioRxiv submission twitter.com/daniocode/stat… in this paper we added further resources and results. (1/n)

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DANIO-CODE@daniocode·4 Tem

Thanks for technical support by @ZFINmod, @GenomeBrowser, @emblebi, @ensembl, and @dnanexus. (14/n)

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DANIO-CODE@daniocode·4 Tem

Also, huge thanks to the #Horizon2020-programs (@ZencodeITN, @AQUA_FAANG, @PrecisionTox). DANIO-CODE has been an example of how Horizon support boosts bottom-up collaboration including the UK (@Stick2Science, @Scientists4EU). Thanks also to @wellcometrust, @BBSRC (13/n)

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DANIO-CODE@daniocode·4 Tem

The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet nature.com/articles/s4158…. In addition to the BioRxiv submission twitter.com/daniocode/stat… in this paper we added further resources and results. (1/n)

DANIO-CODE@daniocode

DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.110…

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