Steve Schaffner @[email protected]

660 posts

Steve Schaffner @glipsnort@mstdn.science banner
Steve Schaffner @glipsnort@mstdn.science

Steve Schaffner @[email protected]

@glipsnort

Population genetics, infectious disease, and sometimes beagles

Broad Institute, Cambridge, MA Katılım Eylül 2012
126 Takip Edilen241 Takipçiler
Michael Baym
Michael Baym@baym·
My favorite part of air travel is the gentle gaslighting of the rules being enforced differently every time and the agents insisting that they’ve always been that way
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Yohan J. John
Yohan J. John@DrYohanJohn·
There is a huge difference between modeling 𝘥𝘢𝘵𝘢 and modeling a 𝘱𝘩𝘦𝘯𝘰𝘮𝘦𝘯𝘰𝘯. The success of AI/ML means that the former is eclipsing the latter in neuroscience, and I imagine in many other fields.
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Michael Baym
Michael Baym@baym·
For years I’ve had a photo project of windows crashes in hilarious places, and I feel like today was just a phenomenal birthday present from the universe For example, an MBTA turnstile from 2010:
Michael Baym tweet media
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Vince Buffalo
Vince Buffalo@vsbuffalo·
I think it's fair to say the blame doesn't fall entirely on that model, but other (e.g. regulatory) failures too. From an epistemic perspective finance is fascinating because holding wrong beliefs is tangibly costly. If your uncertainty calculations are wrong, you go broke.
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Vince Buffalo
Vince Buffalo@vsbuffalo·
I re-read this article last night, about how the Gaussian copula function is just a really bad way to model correlated risk in CDOs, and how this played a role in the 2008 financial crisis. Perhaps the highest monetary cost of a model being wrong ever? wired.com/2009/02/wp-qua…
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Kieran Samuk
Kieran Samuk@ksamuk·
PSA, since I've now seen problems arising from this: As of Sept 2023, GATK no longer makes missing genotypes explicit in VCFs (i.e. "./." as in the VCF spec). Missing genotypes are instead coded as "0/0" with a DP=0 format field. See attached for examples.
Kieran Samuk tweet media
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RNSuperHero
RNSuperHero@RNSuperHero·
I don’t understand how shared rooms are even allowable with HIPAA laws. Because I guarantee bed 1 can hear everything you’re telling bed 2.
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Vince Buffalo
Vince Buffalo@vsbuffalo·
Hume must be rolling over in his grave. When I read this, I think scientists need more training in philosophy. The complete blurring between is and ought, between a positive statement like “genetic variability exists” and values “is it good or bad” is poor reasoning in my view.
Vince Buffalo tweet mediaVince Buffalo tweet media
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Omar Kahnstruction Inc
Omar Kahnstruction Inc@NeightFSU·
@oliver_drk @nypost Horribly worded. Could the Chinese had engineered it to protect their own? Absolutely. I’m sure other countries are doing the same. Could it be a coincidence that it also protected another group in the process? Yes. Doesn’t mean the Jews & Chinese are working together on that.
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Forgotten Centrist
Forgotten Centrist@CentristAllWay·
@AlsoWonderWoman @lucky_number9_ @oliver_drk @nypost The study talks about ACE2 receptors. The virus changed in it virulence and morbidity, not its binding to ACE2 receptors. You're absolutely right. The scientists at Cleveland Clinic and Case Western who wrote the paper are Anti-Semitic. We should try to cancel them.
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Kevin Mitchell
Kevin Mitchell@WiringTheBrain·
Found out last night that I can taste and smell food in my dreams (made a delicious dream risotto). I'm wondering how common this is:
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Stephen Luntz
Stephen Luntz@sluntz·
@PGeldsetzer1 @guardian Fascinating research. I'm also bewildered how they justified preventing people over 70 from having access to the vaccine - seems incredibly discriminatory.
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Pascal Geldsetzer
Pascal Geldsetzer@PGeldsetzer1·
Biggest thing to ever come out of my little group. Pls help spread this finding! We found clean, CAUSAL evidence that the shingles vaccine prevents a good chunk of dementia cases. So, could a virus cause Alzheimer’s->YES! Hear me out & see preprint: bit.ly/3MVqXU9 🧵1/
Pascal Geldsetzer tweet media
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Aylwyn Scally
Aylwyn Scally@aylwyn_scally·
Unless the proposal is that animals evolved more than once (and it isn't), this is incorrect. Every animal today is an equally close relative of the first animals.
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Steve Schaffner @glipsnort@mstdn.science
@JonathanMTweet @aylwyn_scally No. All living animals have been evolving for exactly the same length of time since the 1st animal. Some lineages do accumulate mutations faster, but that's not what's meant here. (By that measure, humans are closer to that first animal than mice, say.)
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Drug Monkey
Drug Monkey@drugmonkeyblog·
When you publish a scientific paper approximately how many people do you expect to read it carefully and in depth?
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Michael Baym
Michael Baym@baym·
Oh yeah? Well my blue check was never there to begin with
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