Ingvild E. Bjerke

We have created a developmental mouse brain atlas (DeMBA) that covers every postnatal day from 4 to 56!🐁🧠 Segmentations from Allen mouse brain CCF, integrated in tools for spatial analysis. Read the preprint at biorxiv.org/content/10.110… With @KlevenHeidi @maja_pucha ++

Save room in your #SfN25 itinerary for some more 3D 🧠 data exploring research areas from brain development to neuroimmune pathways! Next week's poster lineup features presentations from Drs. @ingvildeb, @EloraMidavaine, Quan Jiang, @ZhennWang, & Yidan Chen.

When and where do #oligodendrocytes emerge during #development? Our recent data acquired in @yongsookimlab using @LifeCanvasTech SmartSPIM reveals a striking spatiotemporal pattern starting in the spinal cord and brain stem. For more details, come see my poster at #SfN2025 🐭🧠🔬

Excited to announce our NIH RM1 grant, investigating impact of ~100 neurodevelopmental disorder risk genes using mice as an animal model. psu.edu/news/research/…

Latest from lab: The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation sciencedirect.com/science/articl… registered to the atlas @AllenInstitute a truly monumental work by @ingvildeb partnering @HumanBrainProj

IMPORTANT PERSPECTIVE in @EJNeuroscience Data sharing and re‐use as a moral imperative in animal research Ingvild E. Bjerke @ingvildeb Universitetet i Oslo @UniOslo @FENSorg @WileyNeuro #Neuroscience onlinelibrary.wiley.com/doi/10.1111/ej…

This paper paper represents years of work in #neuroanatomy, #neuroinformatics and #openscience - thanks to @KlevenHeidi, @SchlegelUlrike and all co-authors for making it possible!

Interested in the basal ganglia, but not familiar with the anatomy of the regions? We have investigated names and boundaries across major rat & mouse brain atlases, and summarized it all in our latest publication🐀 Out now in Scientific Data: tinyurl.com/4b66dbse

Still looking for a postdoc with systems neuroscience skills; in vivo activity recording and manipulation with specific behavioral tasks. NIH funded position available. Please email me. kimlab.io

Are you working with the developmental mouse brain 🧑‍🔬🐀🧠 and want to analyse it with a 3D brain atlas? 🧑‍💻🌐🧠🗺 Come see our poster at poster board 505! #FENSForum2024 @FENSorg @

Come see Heidi’s poster on Saturday 🙌 #FENS2024

Will you be attending #FENS2024? Make sure to join our networking event on 26 June at 18:45 to learn how EBRAINS can support your career! Find out more: ebrains.eu/news-and-event…

@VibLimlab @KlevenHeidi @maja_pucha That’s great to hear, we look forward to see how people use it!

@ingvildeb @KlevenHeidi @maja_pucha Really nice - and super needed for neurodevelopmental labs!!! Our lab is super excited to try it out!

We have created a developmental mouse brain atlas (DeMBA) that covers every postnatal day from 4 to 56!🐁🧠 Segmentations from Allen mouse brain CCF, integrated in tools for spatial analysis. Read the preprint at biorxiv.org/content/10.110… With @KlevenHeidi @maja_pucha ++

Find all the data & tools on the @EBRAINS_eu Knowlege Graph! #openscience #development

I am really delighted to present our EBRAINS Brain atlases and related analysis tools at the annual StratNeuro retreat in Djurönäset ! Great students! Thanks to StratNeuro and INCF and Mathew for organizing this ! #EBRAINS #StratNeuro

Interested in #dopamine and #development? We quantified dopamine receptor 1- and 2-positive cells in the developing and adult mouse forebrain 🚼 🐭 Check out the preprint tinyurl.com/4uxukksp Thanks to everyone on the team and especially @harrycarey2, @About_Memory !

@DrJoyceDaSilva @grandjeanlab @pboehmsturm The atlas is available from nitrc.org/projects/whs-s… under a cc by license and so can be incorporated in tools & workflows 😊

@grandjeanlab @pboehmsturm Is this new version available and ready to be used for fMRI analysis with RABIES? @ingvildeb Looking forward to trying it😁

Do you want to join the rodent multiverse?? In this new collaborative project, I want you to take our standard dataset (209 rats) and preprocess it your way (with registration to SIGMA). openneuro.org/datasets/ds004… Interested? Let me know

Our paper on the Waxholm space rat brain atlas is now out in Nature Methods 🐀🧠 thanks to the whole team including co first author @KlevenHeidi for making this happen! Explore the atlas in the @EBRAINS_eu interactive atlas viewer: tinyurl.com/yeyry79a

A really exciting week for our team - we think we've made a Killer App for analysis of mouse brain histology. It's fast, it's accurate, and it's free! Check out the paper at Nature Communications: nature.com/articles/s4146…

Read about DeepSlice - a fully automatic method to align your coronal mouse brain images to the Allen CCF🧠🐁