
The MASON webserver offers improved design of RNA-targeting antisense antibiotics, taking account of position-dependent effects of mismatches on target bacteria bit.ly/40P05dx
Jakob Jung
123 posts

@jakobjung
➡️ https://t.co/0x051fans3 🦋 https://t.co/3HwHCi2MKF 🦋 comp. biologist, species-specific antibiotics. (he/him)

The MASON webserver offers improved design of RNA-targeting antisense antibiotics, taking account of position-dependent effects of mismatches on target bacteria bit.ly/40P05dx












1/6 🎉 Excited to announce WarpDemuX v0.4.4 with RNA004 support! Our (@PatrickBohnPB ) WDX4 model achieves 99.5% target accuracy with 95% yield on the latest RNA sequencing kit from @nanopore. Release notes at: github.com/KleistLab/Warp…



RNA toehold switch-based reporter assay to assess bacterial uptake of antisense oligomers biorxiv.org/cgi/content/sh… #biorxiv_micrbio






We determined gene essentiality in 13 Enterobacteriaceae including E. coli, Salmonella and Klebsiella strains, and find ~1/3 of the essential genome is variable -- but! there's no evidence for genus-specific essential genes, implying rapid turnover journals.asm.org/doi/10.1128/mb…






