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@Theiagen has helped over 90 laboratories across 40 countries access critical bioinformatics resources for public health pathogen genomics: microbiologyresearch.org/content/journa… #PublicHealth #Bioinformatics
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Kevin G. Libuit
599 posts
Kevin G. Libuit
@kevinlibuit
Helping laboratories integrate NGS and bioinformatics technologies. VP of Ops @Theiagen & Co-Host of the Bioinformatics Lab Podcast. PNW Enthusiast.
Bellevue, WA Katılım Ocak 2017
440 Takip Edilen463 Takipçiler
Alex Sundermann is a scientist I’ve enjoyed learning from.
In particular, I’m fascinated by his perspective as a boots-on-the-ground infection preventionist who now works to integrate NGS and bioinformatics in healthcare.
His work highlights the undeniable impacts of these technologies. Both clinical and economic. But pathogen genomics in healthcare remains the exception, not the norm.
We spent an hour exploring the challenges holding the field back and–more importantly–proposing solutions that could help to push things forward.
Full episode is live. Let us know your thoughts!
youtube.com/watch?v=XDLokj…
YouTube
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Kevin G. Libuit retweetledi
So grateful to have presented our findings from a large review project assessing metadata usage in genomic epidemiology at ASM NGS in Washington, DC. We hope this work improves repository submissions by pushing for machine-readable data!
(And also improve NCBI mandatory fields)
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Kevin G. Libuit retweetledi
!!SAVE THE DATE!!
Applied Bioinformatics & Public Health Microbiology Conference 🧬
🗓️ Dates: 21 - 23 May 2025
Explore how cutting-edge #Genomics, #Bioinformatics, and sequencing technologies are transforming global #PublicHealth🌍
📎More information: bit.ly/3XW3XIX
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Kevin G. Libuit retweetledi
So great to see such a massive turnout for #ASMNGS! @ASMicrobiology Let’s go! 🚀🧬🦠🧫 #genomics #bioinformatics #publichealth
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Kevin G. Libuit retweetledi
💡🧬🦠🧪Kudos to @theiagen Genomics (@EmilyAnne_Smith); they have created a JSON file for the inputs needed to use the TheiaCov pipeline in @TerraBioApp to analyze amplicon tiling NGS for Mpox Clade 1b.
x.com/noahhull_phd/s…
Through the @APHL Terra Async training (learn.aphl.org/learn/course/e…), users can analyze their amplicon tiling Mpox NGS .fastq files.
You can find this JSON file at:dropbox.com/scl/fi/gf4si03…
This file will soon be added to the Terra Async training materials on the APHL Learning Center.
This work is supported by @CDCgov.
#Mpox #GlobalHealth #Bioinformatics
Noah Hull, PhD, MPH@NoahHull_PhD
🚨 New Courses Alert! 🚨 Explore our latest @APHL Learning Platform self-paced courses on Viral Amplicon Genomic Characterization & Genomic Epidemiology! 📚🌍 Designed for a global public health audience, these trainings include lecture videos, slides, exercises & mock datasets. Perfect for those working on Mpox, influenza, West Nile virus, SARS-CoV-2, HIV, RSV A & B, or any other viral amplicon NGS! 🧬 APHL offers cloud workspaces for low-middle-income countries via our Learning Center, or jump in with your existing @TerraBioApp workspace. These courses were funded by @CDCgov and developed in collaboration with @Theiagen Genomics. Let's advance pathogen genomics together! 🌐 Terra.bio Genomic Characterization: tinyurl.com/APHL-GC Terra.bio Genomic Epidemiology: tinyurl.com/APHL-GE #PublicHealth #Genomics #GlobalHealth
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Kevin G. Libuit retweetledi
@torstenseemann giving a classic Torsten talk = lots of giggles, nods and agreements on the diverse discipline that is #bioinformatics at #GMI14 🇪🇸🧬 #CPG @UniMelbMDHS @TheDohertyInst
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Kevin G. Libuit retweetledi
Kevin G. Libuit retweetledi
One of the reasons I've been quiet on Twitter for a few months is because I've been working on something big - something I'm really happy to share now!
Pathoplexus.org
A new, open-source database for pathogen sequence sharing. 👐🧬🌎
1/12
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Kevin G. Libuit retweetledi
🚨 New Courses Alert! 🚨
Explore our latest @APHL Learning Platform self-paced courses on Viral Amplicon Genomic Characterization & Genomic Epidemiology! 📚🌍 Designed for a global public health audience, these trainings include lecture videos, slides, exercises & mock datasets. Perfect for those working on Mpox, influenza, West Nile virus, SARS-CoV-2, HIV, RSV A & B, or any other viral amplicon NGS! 🧬
APHL offers cloud workspaces for low-middle-income countries via our Learning Center, or jump in with your existing @TerraBioApp workspace. These courses were funded by @CDCgov and developed in collaboration with @Theiagen Genomics. Let's advance pathogen genomics together! 🌐
Terra.bio Genomic Characterization: tinyurl.com/APHL-GC
Terra.bio Genomic Epidemiology: tinyurl.com/APHL-GE
#PublicHealth #Genomics #GlobalHealth
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Kevin G. Libuit retweetledi
We are immensely proud to work closely with the Pathoplexus team to help establish better standards for public health and bioinformatics.🧬🌍
Pathoplexus@pathoplexus
📢 We're excited to introduce Pathoplexus, a specialized sequence database for human viral pathogens! 🌍 🧬 Launching with 4 viruses, Pathoplexus.org combines modern open-source software with transparent governance to improve global pathogen sequence sharing. 1/14
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Kevin G. Libuit retweetledi
Just added 10 recorded workshop sessions from the The National Academies of Sciences, Engineering, and Medicine's recent two day workshop on pathogen genomics in public health to the recorded trainings table. Please share and send me other genomic epi trainings I should add!
Krisandra Allen@KrisandraA
Calling anyone interested in #genomicepi training! I've put together a list of 124 (and counting!) free webinars and recorded trainings related to genomic epidemiology. Know any additional resources - share them so I can get them added! genomicepi.com/publichealth.h…
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The windy roads are way more fun.
And no career track is straight line, anyway.
Seeing opportunities in academia, private industry, and public service,@Sharvari__N tried it all.
Through this journey, she's crafted a creative scientific path that inspires her daily.
📺youtube.com/watch?v=o9Y_CK…
🔊on.soundcloud.com/trcp5xcfz6uqFa…
YouTube
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Kevin G. Libuit retweetledi
Congratulations to @RyderRahil and @EmilyAnne_Smith and all co-authors - great work reviewing sequence data for SARS-CoV-2 recombinants in California!! @VirusesMDPI
mdpi.com/1999-4915/16/8…
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Kevin G. Libuit retweetledi
While Ollie doesn't seem particularly concerned, I find the continued detection of HPAI (H5N1) in cats without known epi links to dairy cattle fairly alarming. Thanks to those that are rapidly testing, sequencing, and sharing data for the ongoing outbreak!
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Congrats, @Dr_KFO!! You’ve been pushing things forward ever since stepping foot in public health. Thank you for everything you’ve done for both the field and me personally. Fantastic colleague and friend
Christin H.@chanigan
Congratulations to @Dr_KFO this years #APHL emerging leader award! Much deserved! Thankful for all of your work and energy into furthering sequencing and bioinformatics here in public health! #sequenceallthethings
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Kevin G. Libuit retweetledi
Kevin G. Libuit retweetledi
Excited to host @ksbakes Tuesday April 30 9-10am PST Microbial genomics for understanding the epidemiology and management of shigellosis calendar.ucsf.edu/event/eppicent…
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Kevin G. Libuit retweetledi
Another milestone for @APHL and @GlobalFund! This week’s training at the @EPHIEthiopia 🇪🇹 focused on #wastewater surveillance using NGS, mNGS, bioinformatics, & genomic epidemiology. 🧬 The team successfully completed a full analysis independently on @TerraBioApp discovering unique SARS-CoV-2 variants not previously identified in Africa. 🦠 The newly inaugurated (Feb 2024) Integrated Pathogen Genomic and Bioinformatics Facility is set to be a cornerstone for Ethiopia and beyond! 💎 #PublicHealth #GlobalHealth
Ethiopia 🇪🇹 English