Kim Philipp Jablonski

#datavzrd, our tool for rendering modern interactive, visual, server-free, tabular scientific HTML reports with zero/low-code (datavzrd.github.io), now has a tutorial (1-2h): datavzrd.github.io/docs/tutorial.….

We have made many updates to our SCICoNE results. Everything is described in this new version of our preprint: biorxiv.org/content/10.110…

The most important part of a histogram: The number of bins. Here are a few techniques to optimize it: 1/8

I am happy to finally announce the release of #Snakemake 8.0! In about half a year, we have modernized large parts of the code base. Most importantly, Snakemake 8.0 introduces a versatile plugin system, redesigned support for external storage, and modernized documentation. (1/n)

Zooming around a bacteria cell. It's so cool I just got the cell imported (including lipids) and rendering correctly with the new rendering engine (it's called Angstrom). 3x performance boost! So much detail (too much?!) #screenshotsunday #gamedev #scicomm #xcode #swiftlang

We are thrilled to announce the release of Jupyter Notebook Version 7! 🚀 📝💻 Real-time collaboration, visual debugging, dark mode, and more! Read our latest blog post to discover what's new! blog.jupyter.org/announcing-jup…

The next Computational Reproducibility seminar is this Wednesday at 5 pm: Kim Philipp Jablonski @kpj_py at @Google is going to speak about sustainable tool benchmarking and workflow development in Computational Biology. -- Join us for free at: ethz.zoom.us/j/65832714361 @SwissRN

A tree map of all GO BP terms 😵‍💫

There's a new programming language in town - it's Mojo! I'm more than a little excited about it. It's Python, but with none of Python's problems. You can write code as fast as C, and deploy small standalone applications like C. My post is below, and a 🧵 fast.ai/posts/2023-05-…

You can see the `SyntaxError` in the code block in the first tweet. Python is expecting a float because of the . after the 5 There are a few options, but the "cheat" option is to add a space between the 5 and the . Yes, that's it! Don't miss the extra space… /2

I remember reading about determinants in high school. The name was scary and not much context was given. 😦 For a long time, a determinant was just a value I had to blindly compute using a formula. Here's what I would like to know about determinants when I first started... 🧵

Want to learn about {purrr} & the updates in the 1.0.0 release? In this video @hadleywickham introduces {purrr} & shares some of his favorite highlights of this release (hint: progress bars, better error messages, some new map & list functions, & more). #rstats #tidyverse

K-Means has two major problems: - Number of clusters must be known - Doesn't handle outliers But there's a solution! Introducing DBSCAN, a Density based clustering algorithm. 🚀 Read more 🧵👇

Radiation-hardened quines: a program such that you can delete a single character and it still outputs itself I wonder *how* radiation-hardened you can make a quine? What's the maximum fraction of characters which can be deleted in a self-reproducing program?

Use .set_sticky with .style to keep the index in view on wide dataframes.

In case anyone missed the original post a while back, here is a *FREE* BioRender equivalent that has image assets compatible with InkScape and other illustrator platforms. bioicons.com

#つぶやきGLSL float e,i,a,w,x,g;for(;i++<1e2;){vec3 p=vec3((FC.xy-.5*r)/r.y*g,g-3.);p.zy*=rotate2D(.6);i<1e2?p:p+=1e-4;e=p.y;for(a=.8;a>.003;a*=.8)p.xz*=rotate2D(5.),x=(++p.x+p.z)/a+t+t,w=exp(sin(x)-2.5)*a,o.gb+=w/4e2,p.xz-=w*cos(x),e-=w;g+=e;}o+=min(e*e*4e6,1./g)+g*g/2e2;

#pandas 2.0 will be released soon. I wrote about one of the most important changes we're shipping with it. datapythonista.me/blog/pandas-20…

I’ve built a *very* shiny button 🫳🪩

Good news everyone! A new version of graph-tool is just out! @graphtool graph-tool.skewed.de Single line installation: Anaconda ⤵️ conda create --name gt -c conda-forge graph-tool Homebrew ⤵️ brew install graph-tool Debian/Ubuntu⤵️ apt-get install python3-graph-tool 1/2