The Single Cell World

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The Single Cell World

The Single Cell World

@singlecellworld

Unlocking the 🌎 of Single-Cell & Spatial Omics 🔬One cell at a time! 🔄 Building a community | Cátia Moutinho, PhD

Worldwide Katılım Ekim 2022
450 Takip Edilen1.3K Takipçiler
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Ali Max Erturk
Ali Max Erturk@erturklab·
Discover the future of 3D-omics! Our perspective aritcle explores how tissue clearing and AI with single-cell omics could revolutionize understanding of entire organs & organisms. Read the full article: nature.com/articles/s4159…
Ali Max Erturk@erturklab

What if we could map every cell in the body, revealing its location and molecular identity? In this @NatureMethods perspective, we discuss the new era of 3D-omics by tissue clearing and AI, called Deep 3D Histology: rdcu.be/dNBe8 PDF: bit.ly/3WaD0QU 🧵👇🏼

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Ming "Tommy" Tang
Ming "Tommy" Tang@tangming2005·
1/ 23 tools to work with (single-cell) TCR/BCR-seq immune repertoire data🧵
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Ankur Sharma
Ankur Sharma@asharmaiisc·
Systematic comparison of sequencing-based spatial transcriptomic methods in @naturemethods In summary: “- Stereo-seq, Slide-tag, Visium shows the better capture efficiency with raw sequencing depth - Slide-seq V2, Visium (probe), DynaSpatial gives the better capture efficiency with normalized sequencing depth.” nature.com/articles/s4159…
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Ming "Tommy" Tang
Ming "Tommy" Tang@tangming2005·
1/ 7 FREE Books to learn data science🧵
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Lukas Valihrach
Lukas Valihrach@LukasValihrach·
Single-nucleus and spatial transcriptomic profiling of human temporal cortex and white matter reveals novel associations with AD pathology biorxiv.org/content/10.110…
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Moffitt Laboratory
Moffitt Laboratory@MoffittLab·
So excited to announce our new method for multiplexed RNA imaging in bacterial cells: bacterial-MERFISH! A huge congratulations to the team of @AriSarfatis, Yuanyou Wang, and Nana Twumasi-Ankrah! Check out the following thread or our bioRxiv (biorxiv.org/content/10.110…) 1/12
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Samantha Morris
Samantha Morris@morris_lab·
CellTag-multi is finally out in @NatureBiotech nature.com/articles/s4158…. We didn't make the cover this time, but I love what we put together with @DrawImpacts! Here's our fun vision of CellTag cell barcoding and capture across single-cell RNA-seq and ATAC-seq @kjkjindal
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Nature Biotechnology@NatureBiotech

The June issue is live nature.com/nbt/volumes/42… On our cover, Roohani et al. present GEARS, a computational method that integrates deep learning with a knowledge graph of gene–gene relationships to simulate the effects of genetic perturbations go.nature.com/3E37kEo

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10x Genomics
10x Genomics@10xGenomics·
Technology impacts the reliability of your #singlecell data. An independently conducted study reported that our Chromium Flex and 3' assays outperformed other technologies. See how the others stacked up: biorxiv.org/content/10.110…
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