Thomas Jeanne

decontam functionality is now available through QIIME2. Thanks Jorden Rabasco and QIIME team.

Healthy #soil is a real powerhouse: 🐞 Habitat for soil #biodiversity 🌤️ Carbon store and #climate regulator 💧 Water tank and purifier 🌻 #Food producer 🏺 Keeper of heritage Protecting #soilhealth ensures its many functions that enable life on Earth! via @unccd

My colleague Richard Hogue present a poster at #GSB2023 Long-term effect of crop management practices on Clay soil properties and microbial diversity Poster number: P98

Spatial, temporal and technical variability in the diversity of prokaryotes and fungi in agricultural soils. @irda_qc #soilhealth #soilmicrobiome #soilbiodiversity #qiime2  Frontiers in soil science doi.org/10.3389/fsoil.…

My new review on bias in microbiome studies is out in the journal Microbiome! microbiomejournal.biomedcentral.com/articles/10.11… I originally wrote this as part of my comprehensive exam for @Dal_micro_immun ! I'm glad that it is now being shared with the rest of the field #microbiome

Good new work leveraging accurate long-read amplicon sequencing to generate far more comprehensive references for specific environments. Makes standard amplicon profiling more informative and comparable across studies: mbio.asm.org/content/11/5/e… @msdueholm @MadsAlbertsen85

From today, code can be an integral part of a paper published in eLife. Announcing the Executable Research Article, a new open format for research papers where code can be run directly in the browser elifesciences.org/labs/dc5acbde/…

Want to learn about microbiome bioinformatics from members of the @qiime2 team? Mark your calendars for October 5-9, 2020 for a five-day **online** course! Details at forum.qiime2.org/t/microbiome-b…

À la recherche des vignobles québécois ? Voici une carte ! lapresse.ca/gourmand/alcoo… via @lp_lapresse

Our PICRUSt2 manuscript is out in Nat. Biotech. rdcu.be/b4yta Absolutely phenomenal work by @gavin_m_douglas #16S #microbiome #metagenomics #bioinformatics

Our @qiime2 protocols paper is finally online at @currentprotocol! Long time in the making. Endless thanks to the amazing team I got to work with on this, especially Serene Jiang, the other co-1st. A summary of what makes this tutorial useful: dx.doi.org/10.1002/cpbi.1… 1/10

This study recommends truncating reads with q=18 before DADA2. Please don't do this! You will lose lots of your useful reads. My first twitterant. 1/18 doi.org/10.1186/s12859…

When data & science are moving this fast, it's hard to keep up. After a short pause, we are very happy to have a new #COVID19 #SARSCoV2 Situation Report Narrative online at nextstrain.org/narratives/nco…. Translations will follow. Here, we cover what the latest sequences tell us. (1/2)

Oh, wow! Check this out.⠀ ⠀ A farmer stumbled upon FOUR giant armadillo relatives, called glyptodonts, in Buenos Aires, Argentina. Presumably, the close association suggests they were a social group. They're about 20,000 years old. ⠀ Images: CEN/Incuapa-Conicet.

@EssiColo @fedora @gnome Cool! Tu passes en mode dnf shell😉

So happy to see this paper led by @JenniferRocca1 out in @ESAEcology! We show that rare microbial taxa emerge during community coalescence and drive the maintenance of microbial functions and diversity. With @DrBioGC @JPWrightEcology @Alex_Washburne esajournals.onlinelibrary.wiley.com/doi/10.1002/ec…

metacoder - A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy). #rstats github.com/grunwaldlab/me…

Thank you 2011 @MarkGerstein - I needed to say exactly this in my slide deck and this figure is quite prescient, especially thinking about commercial cloud. genomebiology.biomedcentral.com/articles/10.11…