Yishaia Zabary

26 posts

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Yishaia Zabary

Yishaia Zabary

@yishaayaz

Data Scientist and a software engineer. Cell biology enthusiast and researcher.

Be'er Sheva Israel Katılım Şubat 2010
134 Takip Edilen14 Takipçiler
Yishaia Zabary
Yishaia Zabary@yishaayaz·
Proud to have my 1st book chapter published! The monolayer cell migration quantification pipeline was used extensively in the past and is now available for all to use! See @AssafZaritsky tweet for free access details :) Thanks @AssafZaritsky for the opportunity!
Assaf Zaritsky@AssafZaritsky

Happy to share @yishaayaz and my book chapter describing a pipeline for spatiotemporal quantification of monolayer cell migration! It was used to analyze thousands of monolayer migration experiments and the chapter provides all the information for effective use by others ☺️ 1/2

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Yishaia Zabary
Yishaia Zabary@yishaayaz·
As a small part of Assaf's lab, this is but an additional confirmation that I'm in the right place&time to research and study computational cell dynamics 🙂
Assaf Zaritsky@AssafZaritsky

Super excited to be among those selected and looking forward to working together with the other performers toward achieving ΔTissue ambitious goal of building a ‘tissue time machine’ platform for integrated predictive modeling of key cell and tissue states and transitions!

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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Meghan Driscoll and I are organizing a #cellbio2021 subgroup on “Making Big Data Work” in cell biology. If you generate, mine, and/or integrate large scale microscopy datasets please submit an abstract by August 3!
Assaf Zaritsky tweet media
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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Preparing for the 2nd run of my graduate course on Data Science in Cell Imaging @bengurionu! Twitter, what new notable topics/papers should I include this year? Last year's course assafzar.wixsite.com/dsci2020/lectu… (stopped updating at some point... hope to improve at that...) Please RT!
Assaf Zaritsky tweet media
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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Excited to share my lab’s first @biorxivpreprint where we present a computational method to systematically infer long-range mechanical cell-cell communication through the extracellular matrix (ECM) from 3D live imaging of ECM remodeling fluctuations! biorxiv.org/content/10.110… 1/n
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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Happy that I could contribute to Shai Adar and @TheEliaLab beautiful manuscript suggesting that cells coordinate their behavior via intercellular bridges formed during cytokinesis in early #zebrafish embryogenesis! biorxiv.org/content/10.110…
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Yishaia Zabary
Yishaia Zabary@yishaayaz·
Quantifying&Visualising platelets spreading dynamics differences on fibrinogen & collagen IV in spatiotemporal context. A paper I participated in, with the very awesome @MelanieBokstad at @WeizmannScience institute. All as a small part of the @AssafZaritsky laboratory @bengurionu
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Assaf Zaritsky@AssafZaritsky

First paper with a lab member contribution! f1000research.com/articles/9-449… Spatiotemporal quantification and visualization of platelet spreading IRM imaging by talented @bengurionu undergrad @yishaayaz! Fun collaboration with @MelanieBokstad and Benny Geiger lab @WeizmannScience :-)

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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Very excited to share my last postdoc project at the @gdanuser1 lab where we "reverse engineered" a neural network to identify the cellular properties that distinguish aggressive and less aggressive metastatic melanoma! “Tweetorial” follows! biorxiv.org/content/10.110… 1/n
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ChimeraX (bsky: chimerax.ucsf.edu)
ChimeraX (bsky: chimerax.ucsf.edu)@UCSFChimeraX·
Neurons in 0.1 millimeter cube of mouse cortex layer 4 from serial block face electron microscopy. To show a surface for each region of a segmentation with integer segment id at each map grid point use command "segmentation surfaces #1". #ChimeraXHowTo
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Assaf Zaritsky
Assaf Zaritsky@AssafZaritsky·
Slides of lecture 6 on deep learning in microscopy are now publicly available in the course website! assafzar.wixsite.com/dsci2020/lectu… The lecture was about generative models for cell structure and classifying cell state with deep learning
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🇮🇱 Dana Cassidy
🇮🇱 Dana Cassidy@its_dana_ok_bye·
יאיר נתניהו מותק, מה נשמע? שמע, באמת, לא בקטע רע, אבל ישנתי על זה לילה, והחלטתי לארגן לך איזה טיול או שניים או שלושה בבית משפט. חשבתי על בית המשפט בדימונה, מה אתה אומר? ניפגש 💙
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שמעון ריקלין
שמעון ריקלין@Riklin10·
ערב טוב לבני גנץ. עשה מה שהצעת לנתניהו: תפרוש מהמרוץ. תחקר. ותענה למשטרה על כל ענייני המימד החמישי. תנקה את עצמך. ואז תחזור למירוץ הבא שיהיה כשאתה חף מכל אשמה. כמו שהסברת עד כמה חשוב שמועמד לראשות ממשלה יהיה כזה. בידידות רבה ובהצלחה במשימה
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HHMI | Janelia
HHMI | Janelia@HHMIJanelia·
Janelia scientists Philipp Keller and Kate McDole have been awarded 5th place in the Nikon Small World in Motion competition. Their winning entry shows the inside of a developing mouse embryo as the neural plate (which later gives rise to the brain and spinal cord) elongates.
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Marques Brownlee
Marques Brownlee@MKBHD·
Ready for another AirPods Pro giveaway? Got five pairs this time. Just RT and you're in! Giveaway open worldwide, winners will be picked on Monday. Good luck!
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Keşfet

@AssafZaritsky @Avinoam_lab @Tzahore @doug_millay @Dev_Cell @EiglerTamar @GiuliaZarfati @Tzahor_Lab