Marks Lab

deboramarks: Will predicting viral evolution be a good thing?

deboramarks: Should disease research focus on earlier diagnosis rather than drug discovery?

deboramarks: Can AI help predict pancreatic cancer earlier? nature.com/articles/s4159… and hms.harvard.edu/news

deboramarks: RT @sara_mostafavi: MLCB 2023, coming back in November 29-30 as a hybrid conference (Seattle !). Check out the fantastic list of invited speakers @elhamazizi @bidumit @alexrives : sites.google.com/cs.washington.… with great co-organizers @suinleelab @QuonBio @anshulkundaj…

deboramarks: Applicable to other viruses- disease X- to anticipate immune escape - no antibody data needed twitter.com/nthadanin/stat…

deboramarks: RT @AlanNawzadAmin: The preprint of my work with Eli Weinstein and Debbie Marks is up! In it we show that your off-the-shelf kernel for biological sequences is probably not as flexible you thought and build alternative sequence kernels that … arxiv.org/abs/2304.03775

deboramarks: Check out this job at Harvard Medical School: Project Manager, Predictive Modeling linkedin.com/jobs/view/3567…

deboramarks: RT @ml4proteins: Next week on 4/11 @ 4 pm EST, we'll have @NotinPascal talk about hybrid protein language models for fitness prediction! ml4proteinengineering.com/apr-11

deboramarks: Interested in making AI work for Bio and sustainability? Join the community! discord.gg/RWgxbjZp

deboramarks: @LubanLab So naming goes by genome sequence identity?

deboramarks: @LubanLab Why not SARS-CoV-3? What are the virology rules that I need to learn?

deboramarks: RT @NotinPascal: We now have a dedicated repo for the initiative: github.com/OATML-Markslab…. You are aware of a relevant assay that we have not yet included? Your favorite model is not there yet? Please see the repo instructions for suggestions of new assays & models

deboramarks: RT @NotinPascal: With 94 assays total, ProteinGym is the largest curated collection of DMS assays to assess the ability of protein models to predict the effects of mutations -- but this is just the beginning, and we will continue to add new …

deboramarks: RT @NotinPascal: A few updates regarding the ProteinGym benchmarks! proteingym.org

deboramarks: @jmschreiber91 Worse than that - many methods cannot discover anything because ‘benchmarks’ are just inadequate for the goal

deboramarks: RT @igisci: Happy #LGBTSTEMDay! Our artist @mpk_draws (she/they) was inspired to promote queer representation by illustrating some contemporary queer STEM researchers – keep reading to find out a little about each person pictured! 🏳️‍🌈🧵 1/6 … pic.twitter.com/huUqQsJpqA

deboramarks: @anshulkundaje Harvard - not officially allowed whatever the funding source. Been a huge problem during Covid …

deboramarks: @kulesatony I like Abbas,Lichtman and Pillai cos it’s v simple

deboramarks: @JohnAllenPaulos Equivalent to the white and black counters problem. Nice.

deboramarks: Looking to buy a stock of swabs for nasal samples - first use case advertised on A is 'Gun Cleaning' - what does that tell us? pic.twitter.com/lcIsMRmDNN