@erikgarrison Pangenome workshop and conference this coming week.
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genenetwork
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genenetwork
@GeneNetwork2
GeneNetwork is a free FOSS FAIR+ web service for genetics, genomics & EHR data. Precision medicine—Like GTEx but more species, realtime stats. Since Jan 1994!
Memphis, TN เข้าร่วม Ekim 2016
502 กำลังติดตาม174 ผู้ติดตาม
Next week in Memphis: #MemPANG23 pangenome.github.io/MemPanG23/, a workshop on the theory and practice of working with lots of genomes. Join us online next Friday June 2nd from 9:00-16:00 (CDT/UTC-5) for 6 talks on pangenomics (webinar tennesseehipaa.zoom.us/j/92881122014?…)
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Massive overhauls of GeneNetwork databases to improve speed and to prevent table locks during updates and edits. Now using InnoDB: en.wikipedia.org/wiki/InnoDB
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Terrific presentations by @flavia_villani & @AndresGuarahino in genetics course at UTHSC on the pangenome draft paper
biorxiv.org/content/10.110…
and paper with @erikgarrison and @v_colonna on cross-chromosome recombination in humans. Yes it happens!
biorxiv.org/search/flavia%…
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genenetwork รีทวีตแล้ว
New package from our group: MetabolomicsWorkbenchAPI.jl is a Julia package to work with the Metabolomics Workbench REST service. @GeneNetwork2 @OPARProject
JuliaPackages@JuliaPackages
New package: MetabolomicsWorkbenchAPI v0.1.0 announced #JuliaLang Release notes: > - Initial release version 0.1.0 Registration: github.com/JuliaRegistrie… Repository: github.com/senresearch/Me…
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Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:
10years.guix.gnu.org/video/gnu-guix…
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CHALLENGE: How to keep genetic and genomic data unidentifiable but sharable?@erikgarrison @pjotrprins and @RichardMott7)are making progress toward this key challenge in individualized health care.
Pangenomes need protection too! Here is Erik’s latest
privvg.github.io/2022/09/24/pra…
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Several user interface upgrades and addition of icons to GeneNetwork’s main Search page today (25Sep2022).
Thanks to Zach Sloan.
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@sysgenschool And our four groups and their areas of focus.
Of course significant complementarity and intentional overlap.
And your own questions and tests.
@rupertoverall @KMozhui
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@sysgenschool Judea Pearl’s #Book of Why definitely worth reading if you are interested in causal modeling and the synthesis @rupertoverall mentioned in presentation. And lots of genetics too. Highly recommended.
en.m.wikipedia.org/wiki/The_Book_…
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GeneNetwork is working beautifully at Day 1 of @SysGenSchool
More intense use coming soon.
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genenetwork รีทวีตแล้ว
We develop a method for high-throughput frailty assessment using machine vision is out @NatureAging. We worked with Gary Churchill and @NathanShockCtrs This tech will enable scalable and objective aging studies. Detailed tweet to follow. rdcu.be/cTLJi
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Rupert highlighting boolean networks for ageing and metabolism @sysgenschool
He is using Minerva for this work. We will be test driving this week.
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genenetwork รีทวีตแล้ว
plot your data.
plot your data.
plot your data.
plot your data.
plot your data.
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Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
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Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
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Great Hacker News thread on user interface design and optimization. It hard and a community effort—
news.ycombinator.com/item?id=321479…
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Hey GN coding team— to say but correlations are running VERY SLOWLY today, even against BXD phenotypes. What gives? Took 262 seconds. Is one process competing with another?
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Worth following Albert Rapp @rappa753 . Code we might use for improved GUIs.
Albert Rapp@rappa753
I am rebuilding my #rstats blog from the bottom up with #quarto. This will let me use quarto's cool new tricks like tabs and easy columns. I've already spent hours using quarto's great docs to build a custom blog. If you want to do the same, let me show you what I did.
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