Frederik O. Bagger รีทวีตแล้ว
@Rigshospitalet @UCPH_BRIC
We are located in sunny and pleasant Copenhagen
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Frederik O. Bagger
63 posts
Please RT Just two more days to apply for permanent bioinformatics position - use code to save lives in beautiful Copenhagen! Great collaborative team, diverse tasks, and meaningful outcomes
rigshospitalet.dk/job-og-uddanne…
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Frederik O. Bagger รีทวีตแล้ว
Delighted to finally see this out in @LeukemiaJnl. Thanks to great efforts by @MTrempenau @bruhn_mikkel @Mafalda_AP @pundhir_sachin and not least many collaborators. @Rigshospitalet @UCPH_BRIC @UCPH_health
nature.com/articles/s4137…
1/n
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One week left to apply! 👇
Frederik O. Bagger@fobinf
We are increasing our bioinformatics team with two permanent positions! Come and work in an incredible team of developers and bioinformaticians at Genomic Medicine in charming Copenhagen. Coding saves lives in personalised medicine! rigshospitalet.dk/job-og-uddanne… pls. RT
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We are increasing our bioinformatics team with two permanent positions!
Come and work in an incredible team of developers and bioinformaticians at Genomic Medicine in charming Copenhagen.
Coding saves lives in personalised medicine!
rigshospitalet.dk/job-og-uddanne…
pls. RT
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Frederik O. Bagger รีทวีตแล้ว
Top performance by Genomic Medicine dep @Rigshospitalet in @precisionfda challenge: precision.fda.gov/challenges/18/…
🥇in Somatic Variant Calling
🥈 in TMB Estimation
Bioinformatic pipeline based on @gatk_dev
Rigshospitalet@Rigshospitalet
Bedst i verden til at finde kræftmutationer: Amerikanske FDA uddeler guldmedalje til Afdeling for Genomisk Medicin. bit.ly/3gVI9YN #personligmedicin #sundpol @cancer_dk
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We have two open permanent positions in my clinical team for bioinformaticians either with or without clinical experience. Great people, meaningful work and exciting challenges! Copenhagen is lovely. Deadline Tuesday rigshospitalet.dk/job-og-uddanne…
rigshospitalet.dk/job-og-uddanne…
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@kjhealy it’s a super beautiful data viz book! I suggest to add notes on Sina plot found in ggforce (which is also what you have on the cover, if I’m not mistaken?)
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@alextuowang @jwbelmon It’s beautiful and well explained! I vote for also including the Sina Plot (ggforce), which would complement very well what you present.
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I wrote a series of tutorials on some powerful extensions of {ggplot2}.
Link: tuowang.rbind.io/post/2021-03-2…
tuowang.rbind.io/post/2021-04-0…
#rstats #dataviz #ggplot2
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Frederik O. Bagger รีทวีตแล้ว
@ngehlenborg @anshulkundaje @keller__mark Looks super nice! adding geom_sina() as an alternative to the violins, will provide an immediate feeling of the number of cells in each class. This can be very important information, and added with no extra inc
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I may add that working with @TobiasStannius should be reason enough to join us !
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Frederik O. Bagger รีทวีตแล้ว
Fast gene set enrichment analysis #Rstats
Preprint: biorxiv.org/content/10.110…
Bioconductor: bioconductor.org/packages/relea…
Source: github.com/ctlab/fgsea/
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@mbraginsky Great idea! I suggest to add geom_sina which will look nice inside the violins. Or alone.
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made a pkg for pirate plots in ggplot: add any of points/means/bars/CIs/violins – better than ye olde bar/box plots
github.com/mikabr/ggpirate
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Frederik O. Bagger รีทวีตแล้ว
@larsjuhljensen @wolfgangkhuber I made the Sina plot exactly to avoid this binning - I think the bins suggests some artificial structure in the plot, which may not be in the data. Show us the data!
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@wolfgangkhuber I personally prefer to plot the cumulative distribution as the first thing since it does not involve any parameters such as bin size or KDE bandwidth, which could affect the result. It just shows the actual data as-is.
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Frederik O. Bagger รีทวีตแล้ว
Hey single-cell folks. We are excited to share our work "TENET, single-cell gene regulatory reconstruction framework for single-cell transcriptomics" with @kjwonl lab, now out in @NAR_Open
academic.oup.com/nar/advance-ar…
We hope its useful to the community! 1/5
Brief summary below
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@CBioVikings Thanks for sharing! Still a bit of time left to apply!
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There is an open #Bioinformatics student assistant position in the Center for Genomic Medicine, Rigshospitalet (#Copenhagen) candidate.hr-manager.net/ApplicationIni…
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Frederik O. Bagger รีทวีตแล้ว
Excited to share this work, now online at @LSAjournal
Brief twitter summary:
twitter.com/kedar_nataraja…
Happy reading !
LifeScienceAlliance@LSAjournal
Single-cell large-scale integrative gene regulatory networks from different mouse cell atlases reveals regulatory crosstalk important for single-cell identity @kedar_natarajan @DanishIAS @NATsdu @GenomicsUnit life-science-alliance.org/content/3/11/e…
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