Aaron Newman Lab

64 posts

Aaron Newman Lab

@AaronNewmanLab

Computational biology, cancer genomics, & stem cell bioinformatics lab @Stanford @czbiohub

Stanford, CA Beigetreten Ekim 2021

264 Folgt732 Follower

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Aaron Newman Lab@AaronNewmanLab·27 Eki

Congrats to a brilliant team for bringing CytoTRACE 2 to life and grateful to our funding sources including @czbiohub @theNCI

Gunsagar Gulati@gungulati

[1/10] We’re excited to introduce CytoTRACE 2 — a major upgrade for inferring developmental potential from single-cell RNA-seq across datasets. @naturemethods Led by @kang_minji_ in @AaronNewmanLab. 📄 Paper: nature.com/articles/s4159… 🔗 Shareable link: rdcu.be/eMTVO

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Aaron Newman Lab@AaronNewmanLab·17h

Thanks @IamLinghua !!

Linghua Wang, MD, PhD@IamLinghua

@aadel_chaudhuri @yuanjamesrao @MayoRadOnc @AaronNewmanLab @StanfordCancer @NIH Incredible🌟huge congratulations, Aadel and Aaron! 🎉🎊👏

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Aaron Newman Lab retweetet

Steven Artandi, MD, PhD@SCIDirector·31 Eki

SCI @AaronNewmanLab & others unveil CytoTRACE 2, a deep learning tool that predicts absolute cell developmental potential from #SingleCell RNA-seq data, outperforming prior methods and refining maps of cell fate and potency across tissues. brnw.ch/21wX6j4 @kang_minji_

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Aaron Newman Lab retweetet

Nature Methods@naturemethods·29 Eki

CytoTRACE 2: an interpretable deep-learning method that uses scRNA-seq data to predict absolute developmental potential across datasets. nature.com/articles/s4159…

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Aaron Newman Lab@AaronNewmanLab·27 Eki

@IamLinghua @czbiohub @theNCI Thanks @IamLinghua!

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Linghua Wang, MD, PhD@IamLinghua·27 Eki

@AaronNewmanLab @czbiohub @theNCI 🎉Congratulations, Aaron!

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Aaron Newman Lab@AaronNewmanLab·27 Eki

Congrats to a brilliant team for bringing CytoTRACE 2 to life and grateful to our funding sources including @czbiohub @theNCI

Gunsagar Gulati@gungulati

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Aaron Newman Lab@AaronNewmanLab·21 Ağu

Excited to share our review on computational advances for #singlecell and #SpatialTranscriptomics @NatRevMCB! Includes: 👉Cell plasticity 👉Spatial #ecotypes 👉#AI and foundation models Brilliantly led by @gungulati J. D'Silva with Y. Liu and @IamLinghua dlvr.it/TCBPZw

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Aaron Newman Lab@AaronNewmanLab·10 Haz

Congratulations to @erinlybrown on her insightful Tools of the Trade highlight of #CytoSPACE just out in @NatureRevCancer! nature.com/articles/s4156…

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Stanford Department of Medicine@StanfordDeptMed·10 Nis

Meet #EcoTyper & CIBERSORTx: #StanDOM's game-changing duo in #CancerResearch: stan.md/3vIz4xI

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Aaron Newman Lab retweetet

Minji Kang@kang_minji_·23 Mar

How to trace developmental potential on an absolute scale from single cell expression data? We are thrilled to announce that CytoTRACE 2 is out on bioRxiv! @AaronNewmanLab github.com/digitalcytomet… doi.org/10.1101/2024.0…

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Aaron Newman Lab@AaronNewmanLab·4 Kas

@Wubing44589261 @MDAndersonNews Thanks, Wubing!

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Wubing Zhang@Wubing44589261·4 Kas

@AaronNewmanLab @MDAndersonNews Well deserved! Congratulations!

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Aaron Newman Lab@AaronNewmanLab·3 Kas

Very honored to receive this award for our work on computational cancer biology from the Dept. of Experimental Therapeutics @MDAndersonNews!

StanfordDBDS@StanfordDBDS

DBDS' Aaron Newman was honored w/ the Daisy Ho Memorial Award from University of Texas MD Anderson Cancer Center. He was selected for recent achievements in the field of developing computational methods to facilitate cancer research and treatment. @MDAndersonNews @AaronNewmanLab

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Aaron Newman Lab@AaronNewmanLab·4 Kas

@ShengqingGu @MDAndersonNews Thanks, @ShengqingGu!

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Shengqing (Stan) Gu@ShengqingGu·4 Kas

@AaronNewmanLab @MDAndersonNews Congratulations!

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Aaron Newman Lab@AaronNewmanLab·4 Kas

@DrMingyaoLi @MDAndersonNews Thanks, Mingyao!

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Mingyao Li@DrMingyaoLi·3 Kas

@AaronNewmanLab @MDAndersonNews Congratulations, Aaron 👍

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Aaron Newman Lab@AaronNewmanLab·12 Eki

@JiaJennyLiu Thanks @JiaJennyLiu! Working hard on bringing 'digital cytometry' tools and related discoveries to the clinic. Stay tuned!

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Jia (Jenny) Liu MD PhD@JiaJennyLiu·12 Eki

@AaronNewmanLab Amazing talk at #targets23 meeting on high resolution single cell and spatial transcriptomics with impressive computational pipelines to deconvolute heterogenous tumor cellular ecosystems. How can we bring this into clinic? Assays still💰⏰, reproducibility

Boston, MA 🇺🇸 English

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Aaron Newman Lab@AaronNewmanLab·2 Eki

@NoorShakfa @hartjackson Indeed, an inspiring paper that beautifully illustrates the concept of clinically and spatially distinct ecosystems in breast cancer. Thanks for the kind words @NoorShakfa!

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Noor Shakfa, PhD@NoorShakfa·2 Eki

Nothing more gratifying than seeing @hartjackson’s work highlighted by the brilliant #AaronNewman @AaronNewmanLab whose group has provided so many valuable tools to understand spatial biology and profiling (i.e CIBERSORTx and EcoTyper, CytoSPACE) 👏🏻 #AACRtii23

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Aaron Newman Lab retweetet

AACR@AACR·22 Eyl

Macrophages and Myeloid Cells: @MaxKrummel, @AaronNewmanLab, @JennGuerriero, and Joseph T. Greene will address this topic in a plenary session at the AACR Special Conference on Tumor Immunology and Immunotherapy (Oct 1-4, Toronto). Learn more: bit.ly/3Pr1bqV #AACRtii23

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Guezguez lab@GuezguezL·21 Eyl

Fantastic session at #CICON23 about current and future developments in #spatial #transcriptomics #singlecell a growing field that open new applications for basic and translational #Immunotherapy 🔬🧬📍🗺 @JoakimLundeberg @AaronNewmanLab

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Aadel Chaudhuri, MD PhD@aadel_chaudhuri·26 Tem

Excited to share that our paper with @AaronNewmanLab is out in Immunological Reviews!! “CD4 T cells and toxicity from immune checkpoint blockade” Led by ⭐️ trainees: @EarlandNoah @WUSTLmstp, Wubing Zhang @StanfordMed, @abulusmani @WashURadOnc & @aishwarya_nene @YaleMed.

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Aaron Newman Lab@AaronNewmanLab·23 May

Thanks for the invitation to speak @sitcancer @theNCI Looking forward to this!

Society for Immunotherapy of Cancer@sitcancer

Join #SITC and @theNCI for the first of 8 FREE webinars on June 28 in our Comp IO series: Facilitating Discovery of New Resistance Mechanisms with Data Visualization. Featuring @AaronNewmanLab of @StanfordMed & @CarstenKriegPhD of @MedUnivSC Register: sitcancer.org/CompIO

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Aaron Newman Lab@AaronNewmanLab·8 Nis

@tae_hwang @MayoClinic @IamLinghua @tangjianpku @kchenken @d_bayik @NCIJBSloan @aruthak Thanks for the invitation. Looking forward to it!

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Tae Hyun Hwang@tae_hwang·8 Nis

1/ Excited to share our first AI, Systems & Spatial Biology in Oncology conf by @MayoClinic on April 21-22. Free Registration: mayo.edu/aioncologyconf…. 🌟 Plenary Speakers: @IamLinghua @tangjianpku 🎤 Featured Speakers: @AaronNewmanLab @kchenken @d_bayik @NCIJBSloan @aruthak

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Entdecken

@IamLinghua @kang_minji_ @czbiohub @theNCI @NatRevMCB @gungulati @erinlybrown @NatureRevCancer