Spatial-Cell-ID

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Spatial-Cell-ID

Spatial-Cell-ID

@Spatial_Cell_ID

The Spatial-Cell-ID EquipEx+ platform provides equipment and expertise for single-cell spatiotemporal transcriptomics (aka #spatialtranscriptomics)

Lyon, France Beigetreten Ocak 2022
98 Folgt127 Follower
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Spatial-Cell-ID
Spatial-Cell-ID@Spatial_Cell_ID·
📢We are recruiting!! Spatial-Cell-ID is looking for a postdoctoral fellow or research engineer in image analysis applied to spatial transcriptomics. Come join us in Lyon to analyze our beautiful MERFISH data! shorturl.at/eijC0
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Yad Ghavi-Helm 🐾
Yad Ghavi-Helm 🐾@yad_ghavi·
🚨Preprint alert! tinyurl.com/2zkmynsd Did you ever dream of generating spatial maps of #enhancer activity at #singlecell resolution in a multicellular organism using massively parallel enhancer-reporter assays? Then spatial-scERA is the method for you!
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jeremy gnfsk
jeremy gnfsk@jeremygnfsk·
bonjour @Spatial_Cell_ID , comment on s'inscrit à la liste de diffusion s'il vous plaît? Je n'ai pas trouvé sur le site
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Yad Ghavi-Helm 🐾
Yad Ghavi-Helm 🐾@yad_ghavi·
🔔Proud and excited to share our latest preprint! We asked this simple question: do TADs really act as strong boundaries or can functional enhancer-promoter interactions be established across TAD boundaries? biorxiv.org/content/10.110… A 🧵on our main conclusions: (1/n)
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Danila
Danila@gtcaa·
It's great to see our article about the multimodal omics analysis framework muon out! Many thanks to everyone who provided feedback along the way. 🙌 See a few highlights in the thread below.
Genome Biology@GenomeBiology

MUON, from @gtcaa, Kats & @OliverStegle, a package for organizing, analyzing, visualizing & exchanging multi-omics data. It is based around MuData, an open data structure for multimodal data. An example given is ATAC-seq and RNA-seq from single cells genomebiology.biomedcentral.com/articles/10.11…

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Developmental Cell
Developmental Cell@Dev_Cell·
New Resource online now at Dev Cell: A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants - zpr.io/6nU8Z95mJ8qS
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Nikos Karaiskos
Nikos Karaiskos@nu_karaiskos·
How to efficiently analyse & process large-scale spatial transcriptomics data from different techs? We've developed Spacemake that does this and much more biorxiv.org/content/10.110…
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Min Dai
Min Dai@artofbiology·
Spatially resolved transcriptomics and its applications | Nice review from Prof. Mingyao Li's group @DrMingyaoLi Statistical and machine learning methods for spatially resolved transcriptomics with histology sciencedirect.com/science/articl…
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@FRM_officiel @jeremygnfsk @DenisSchapiro @UniHeidelberg @MatsNilssonLab @scilifelab @RonZeira @benjraphael