bianca dumitrascu

184 posts

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bianca dumitrascu

bianca dumitrascu

@bidumit

Computational Biologist, Assistant Professor of Statistics; @cancer_dynamics @Columbia; Statistical Machine Learning for Biology

New York, USA Beigetreten Ekim 2020
531 Folgt1.1K Follower
bianca dumitrascu retweetet
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3D genome architecture underlies health & disease, but its biochemical basis is hard to study at scale. We present Plate-C: a screening platform that profiles thousands of whole-genome 3D maps in a day ($4 each), discovering many pathways that rewire DNA: biorxiv.org/content/10.648…
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Turlier lab
Turlier lab@virtual_embryo·
How can we learn tissue mechanics directly from patterns and images? In our new preprint, we introduce VertAX, a differentiable vertex-model framework in JAX for simulating epithelia, inferring parameters, and designing target tissue behaviors. shorturl.at/PUzT0 1/5
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bianca dumitrascu
bianca dumitrascu@bidumit·
We're looking for two postdocs to join our team! Topic 1: interpretable diffusion models for multi-scale morphology + genomics data! Topic 2: generation and control of biomaterials! If interested, send me CV + 3 recommendation letters over email!
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bianca dumitrascu
bianca dumitrascu@bidumit·
"As most of us learn in primary school, a key reason authors cite relevant prior work is to help establish support for claims they make. If we don’t necessarily require that those references link to real research, then what are we even doing? "
@

Machine learning research is not serious research and therefore hallucinated references are not necessarily a big deal, agrees a prestigious group of machine learning researchers statmodeling.stat.columbia.edu/2026/01/26/mac…

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bianca dumitrascu retweetet
Jian Zhou
Jian Zhou@zhou_jian·
Excited for the AI & Biology Conference in Suzhou, China (Apr 20-24, 2026)! Don't miss the abstract deadline: Feb 13, 2026. Submit your work on Genome x AI, Protein x AI & more—plus fellowships up to $500. Register now: csh-asia.org/?content/3008
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bianca dumitrascu retweetet
Harris Wang
Harris Wang@harriswangnyc·
📢 Our Dept. of Systems Biology @Columbia has an open tenure-track Assistant Professor position in the broad area of quantitative biology. Come join our awesome department in NYC! Please circulate. Apply: apply.interfolio.com/177622 Suggested deadline: Dec 15, 2025. @ColumbiaSysBio
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Su-In Lee
Su-In Lee@suinleelab·
I'm deeply honored to be elected as an ISCB Fellow this year!🏅 Following last year’s ISCB Innovator Award, this recognition strengthens my commitment to advancing computational biology.🧬 Grateful to my students, mentors, and colleagues for their support! iscb.org/iscb-news-item…
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bianca dumitrascu
bianca dumitrascu@bidumit·
@DrWoappi Thank you 😊 Excited to brainstorm and explore some spatial wound healing together!
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bianca dumitrascu@bidumit·
@MariaPAlcolea @naturemethods Thank you! It is one of our first last author papers from my group :) so it's a very special one. It's been quite a process and we're already thinking of how to improve the pipeline and make it useful to developmental contexts. Happy to chat!
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Loïc A. Royer 💻🔬⚗️
Loïc A. Royer 💻🔬⚗️@loicaroyer·
1/ 📡Exciting news! 🚀 Our #Omega paper has been accepted at @NatureMethods! Omega is a @napari_imaging plugin that uses Large Language Models to assist users with bioimage processing and analysis tasks! Check out our original project announcement (see below), read the paper: nature.com/articles/s4159… and check the high-resolution videos in the tweetorial below! The source code and instructions are available on GitHub: github.com/royerlab/napar… @czbiohub @cziscience @czi @OpenAI @AnthropicAI @ollama
Loïc A. Royer 💻🔬⚗️@loicaroyer

🚨 #ChatGPT + @napari_imaging 🚨 Releasing my latest weekend project: Omega, an autonomous LLM agent that writes image processing and analysis code, fixes its mistakes, accesses the napari viewer, makes widgets, & more! github.com/royerlab/napar… @langchain @OpenAI #OmegaAgent

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bianca dumitrascu
bianca dumitrascu@bidumit·
This is finally out 😊 very thankful to all co-authors, reviewers, and to the very patient editorial team for their effort nature.com/articles/s4159… lots of work went into this and lots of work remains to be done! Slowly moving to bluesky (same handle) so more on this there as well
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Elham Azizi
Elham Azizi@elhamazizi·
I am deeply honored to receive this Prize that celebrates the contributions of immigrants in biomedical science! Thank you to all mentors who supported my journey and to my trailblazing lab members for their brilliant work!
Columbia - Irving Institute for Cancer Dynamics@Cancer_dynamics

Congrats to IICD core faculty member @ElhamAzizi, recipient of the 2025 Vilcek Prize for Creative Promise in Biomedical Science. The @Vilcek award celebrates the contributions of immigrant artists and scientists in the U.S. Read the @CUSEAS announcement: bit.ly/3Q1MKud

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Elham Azizi
Elham Azizi@elhamazizi·
So proud of @Dr_KatieM and @cam_park for showing the power of combining innovative #ML with what we call "Katie Intelligence" (our domain expert in the loop) for building impactful computational tools and applying them to obtain unexpected clinical insight!
Columbia Engineering@CUSEAS

In a paper published today in Science Immunology, a research team led by @columbiaBME @elhamazizi has identified a specific population of immune cells that play a critical role in the successful treatment of relapsed acute myeloid leukemia (AML). The work, in collaboration with @Cancer_dynamics and the Dana Farber Cancer Institute, leverages the team's innovative DIISCO approach, a machine-learning method used to analyze how cell interactions change over time with a focus on cancer and immune cells profiled in clinical specimens. Learn more about the research: bit.ly/4htxAJN @DataSciColumbia

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bianca dumitrascu
bianca dumitrascu@bidumit·
* Patches aims to be replicable and robust, the code is meant to be used by experts and non-experts. Give us feedback on its usability! We are excited to find out how and when the tool can be broken and improved.
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bianca dumitrascu
bianca dumitrascu@bidumit·
* It is the result of a collaborative effort with the @SynRegLab who got us excited about wound healing. Thank you @DrWoappi! We are excited to validate and explore Patches in translational contexts.
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Entdecken

@virtual_embryo @Columbia @ColumbiaSysBio @St_Megas @mo_lotfollahi @ArianAmaani @Antony_Rose_ @teichlab