Chordoma Foundation Labs

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Chordoma Foundation Labs

Chordoma Foundation Labs

@CFLabsResearch

Patient driven research laboratory 100% dedicated to accelerating cures for chordoma. A program of @ChordomaFDN.

Durham, NC Katılım Mart 2024
326 Takip Edilen172 Takipçiler
Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
Much debate right now about the binding affinity prediction abilities of AI models. For anyone interested in validating model predictions experimentally we can provide that for free for the oncology target TBXT. Plus we’re offering $500k in prizes for submicromolar binders: tbxtchallenge.org
Pearl Freier@PearlF

Chemical biologist Derek Lowe wrote about Boltz-2 in his column this week & a recent paper evaluating the AI/ML model for cofolding ligands & proteins. His column: "AI-Predicting Compound Affinity. We Aren't There Yet." He also brought up AlphaFold 3 docking predictions. A link to the column & the recent paper is in the reply

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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
One reason is that experimental validation of model predictions remains a major bottleneck. It’s not the core competency of AI focused companies and often the necessary experiments are too time consuming or difficult with academic labs or CROs. In our experience though providing a fast, low friction solution for experimental validation in relevant disease or target focused assays can unlock a lot of potential.
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Luiza Jarovsky, PhD
Luiza Jarovsky, PhD@LuizaJarovsky·
Everybody wants AI to help cure cancer. Why isn't every AI company obsessively focused on that?
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Demis Hassabis
Demis Hassabis@demishassabis·
The drug design engine we’re building at @IsomorphicLabs is extending the SOTA further across key benchmarks, showing huge progress in accuracy and capabilities critical for in-silico drug discovery. Incredible work from @maxjaderberg and the entire team at Isomorphic Labs!
Isomorphic Labs@IsomorphicLabs

Today we share a technical report demonstrating how our drug design engine achieves a step-change in accuracy for predicting biomolecular structures, more than doubling the performance of AlphaFold 3 on key benchmarks and unlocking rational drug design even for examples it has never seen before. Head to the comments to read our blog.

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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
@maxjaderberg Congrats! Any interest in seeing how it performs in a competition to identify potential binders for an emerging oncology target, TBXT? We provide fast, free testing of up to 96 compounds, plus up to $250k, good press and lots of good karma if you win :) tbxtchallenge.org
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Max Jaderberg
Max Jaderberg@maxjaderberg·
The Iso team has cooked something incredible: our new technical report unveils the latest results from our drug design engine, the IsoDDE, progressing far beyond AlphaFold 3. This breaks new ground compared to AF and other similar methods by a significant degree across all key benchmarks. 1/7
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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
Exciting times for new ways of doing science!
Convergent Research@Convergent_FROs

It's been an incredibly exciting year in metascience at large, and for us at Convergent. Last week, the @NSF announced their Tech Labs Initiative. The week before, we joined teams from our UK FRO Founder Residency (powered by @ARIA_research) in London as they presented the proposals they've been working on since June. All year, our existing Focused Research Organizations (we've launched almost a dozen) have been sharing the fruits of their labor, and we're hard at work on many more new FROs in the pipeline. And this October, like we do every year, we brought our Focused Research Organization leaders, team members, and supporters together for FROCon. Over a few cold, bright, autumnal days in Falmouth, we shared breakthroughs & challenges, identified opportunities for collaboration, and reconnected amidst the day-to-day busy-ness of pursuing our mission. And while we were all in one place, we took a few hours to pull some members of the team aside, to ask them some questions about what we're working on, and why. Here’s the video we made about Convergent. We hope it is a useful artifact for understanding our work, and a helpful preview for what's to come. This year has been a big one, and next year will be even more so. We're so excited about what's to come, and grateful for everyone who's joined us along the way. Happy holidays - from our team to you and yours.

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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
P53 mutations are very rare in chordoma but interestingly this new preprint from our grantee Mateusz Bujko and colleagues at ⁦@MSCNRIO⁩ reports that they are a hallmark of the dedifferentiated subtype. Could have important treatment implications. researchsquare.com/article/rs-737…
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Bo Xia
Bo Xia@BoXia7·
What a wonderful year-end surprise! I’m deeply honored to receive the @broadinstitute's Excellence and Achievement Award in Mentorship, Teaching, or Training — especially as it was nominated by my students — at the Broad’s 21st Annual Scientific Retreat! Supporting their growth in science and careers is a true privilege, and I am incredibly proud to see all that they have achieved over the years! 🙏
Bo Xia tweet mediaBo Xia tweet mediaBo Xia tweet media
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Chordoma Foundation Labs retweetledi
Chordoma Foundation
Chordoma Foundation@ChordomaFDN·
Our grantees at @MDAndersonNews have uncovered a way to direct the immune system against brachyury, and their discoveries led to NIH funding for a clinical trial set to open next year led by @APConley77. Plus, we and @CancerResearch just co-awarded a new grant to the MD Anderson team to lay the groundwork for next-generation treatments. Many thanks to the Cancer Research Institute and our donors for helping make this momentum possible! More details: chordoma.org/latest-updates…
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Benchling
Benchling@benchling·
✨ Introducing Benchling AI — the first command center for scientific #AI. Built-for-science agents, models, and your R&D data, all in one trusted place, so it’s right in your daily workflow. #BenchlingAI is available today for all customers and free for academics! benchling.com/news/introduci…
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Chordoma Foundation
Chordoma Foundation@ChordomaFDN·
Congrats to @CatyLeechang, JP Wolinsky, and the @NorthwesternMed team on this publication, which will help set the stage for future chordoma immunotherapy success. And many thanks to @CancerResearch and our supporters for making this important work possible! Paper here: academic.oup.com/neuro-oncology…
Chordoma Foundation Labs@CFLabsResearch

Important new paper reveals critical features of the chordoma immune landscape and lays the foundation for chordoma patients to benefit from immunotherapy advances. In brief, it: - Provides the largest spatial data set to date including single cell RNA-seq, TCR profiling and multiplex immunoflourescence - Reveals three distinct patterns of immune cell composition in chordoma tumors, potentially pointing to a need for treatment strategies tailored for each - Suggests important roles for myeloid cells in regulating anti-tumor immunity, consistent with several prior studies but providing additional nuance - Identifies several potential mechanisms of immune evasion in chordoma and suggests potential strategies for overcoming this evasion - Demonstrates tumor-specific antigen recognition by tumor-resident and peripheral T cells, suggesting potential for adoptive T cell strategies Huge congrats and thanks to the multi-institutional team behind this foundational study, particularly @CatyLeechang, JP Wolinsky, Victor Arrieta, Jessica Du and colleagues at @NorthwesternMed. We're excited to work with them and others to bring targeted immunotherapy to chordoma patients building on these new insights!

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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
Important new paper reveals critical features of the chordoma immune landscape and lays the foundation for chordoma patients to benefit from immunotherapy advances. In brief, it: - Provides the largest spatial data set to date including single cell RNA-seq, TCR profiling and multiplex immunoflourescence - Reveals three distinct patterns of immune cell composition in chordoma tumors, potentially pointing to a need for treatment strategies tailored for each - Suggests important roles for myeloid cells in regulating anti-tumor immunity, consistent with several prior studies but providing additional nuance - Identifies several potential mechanisms of immune evasion in chordoma and suggests potential strategies for overcoming this evasion - Demonstrates tumor-specific antigen recognition by tumor-resident and peripheral T cells, suggesting potential for adoptive T cell strategies Huge congrats and thanks to the multi-institutional team behind this foundational study, particularly @CatyLeechang, JP Wolinsky, Victor Arrieta, Jessica Du and colleagues at @NorthwesternMed. We're excited to work with them and others to bring targeted immunotherapy to chordoma patients building on these new insights!
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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
TBXT is present in many cancers, especially chordoma, but barely expressed in normal tissue. Aiming to exploit this difference, Cassian Yee and colleagues at @MDAndersonNews have found that TBXT peptides are expressed on MHC receptors and are now developing cell therapies to target this cancer-associated TBXT peptide-MHC complex. The first of these therapies will soon be tested in a clinical trial led by @APConley77 through MDACCs new sarcoma SPORE. Huge thanks and congrats to all involved for this exciting milestone for chordoma! Thanks in particular to @GorlickRichard for leadership of the SPORE. We look forward to seeing how the trial unfolds and continuing to work together to bring TBXT targeting immunotherapies to fruition.
Anthony P Conley@APConley77

grateful to our group involved w/our new #sarcoma SPORE grant. Under @GorlickRichard & Andy Futreal, we have 2 projects (#chordoma & #osteosarcoma). This involves multiple departments. public link: mdanderson.org/research/depar…. Science: Cassian Yee, Shulin Li, Gorlick, & Futreal Clinical: Andy Livingston & I Path core: Alex Lazar & Wei-Lien Wang

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Chordoma Foundation Labs
Chordoma Foundation Labs@CFLabsResearch·
This from @sajithw pinpoints a big source of drag in research and drug development: “Each lab reinvents how experiments are designed, samples are identified, complex data are structured, analysis pipelines run, and results are shared. That’s not even considering work that’s unnecessarily repeated. When a drug program succeeds and a molecule is handed off, or worse it fails and a company shuts down, most of what has been learned is lost. The experiments, data, and processes live on only as tribal knowledge among the scientists there.” We’re trying to avoid this type of needless duplication of effort in chordoma research by sharing protocols through @benchling and data through @figshare. Please get in touch if there’s anything else we can do to help on this front!
Sajith Wickramasekara@sajithw

Long time lurker, breaking a decade of silence to share an essay on what I've learned from scientists about making medicines (spoiler: it's hard) and why the future looks bright (also spoiler: AI) 🧵

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