Harsh Dweep

How to cite miRWalk2.0? nature.com/nmeth/journal/…

@HuffyBicycles I recently purchased a 'MotoX Kids' Quick Connect Bike, 14-inch' (SKU: 79449) and sadly, it arrived defective. I've reached out to support via email/phone but haven't received a response yet. Can someone please assist with a refund or replacement? Thank you!

Project Associate-II position in my lab @ccmb_csir. Last date to submit application through online portal: 18th October 2022 See details: ccmb.res.in/administator/u… Interested candidates with suitable experience may apply.

@kumarjan @India_Alliance Congratulations Janesh sir!!!

Elated to inform that our research program has been supported by the @India_Alliance Senior fellowship award! Deeply grateful for the support and recognition to our group🙏

@kumarjan Happy Dussehra.

Happy #Dussehra2021

@mikhaeldito313 SingleR, Seurat v4, Cibersort, Clustifyr, PanglaoDB are good resources for cell characterization.

What's your favourite #scrnaseq cell-type annotation tool? So far, SingleR worked really well for me. It's so straightforward and the documentation is awesome. How about you?

@thePiggsBoson @readwiseio save the thread!

Wanna Learn Artificial Intelligence and Machine Learning for free? A Thread 👇

@BecomingDataSci 10

Interested in single cell genomics but need help getting started? Check out my lab's Single Cell Genomics Day on March 26. Talks will feature recent exciting computational and experimental advances and will be livestreamed at satijalab.org/scgd. Please RT/spread the word!

@ChetanyaPandya @ChetanyaPandya congratulations 🎉 and Happy New Year!

While 2020 was challenging to say the least, we have a lot to be grateful for - especially our little bundle of joy. Happy New Year 2021, onwards and upwards! #HappyNewYear2021

In a new paper with @JanLause & @CellTypist we argue that the best approach for normalization of UMI counts is *analytic Pearson residuals*, using NB model with an offset term for seq depth. + We analyze related 2019 papers by @satijalab and @rafalab. /1 biorxiv.org/content/10.110…

@jamescai @SingleCellMedia Thank you for the suggestion and retweet. I give it a try.

@HarshBioinfo @SingleCellMedia give it a try alona.panglaodb.se

Does anyone have experience predicting macrophages from mouse single cell data? I have tried singleR with celldex and scRNAseq but not getting enough macrophages. Any suggestions?

New preprint from our group: Using Histopathology Images to Predict Chromosomal Instability in Breast Cancer: A Deep Learning Approach medrxiv.org/content/10.110…

@tangming2005 @roelverhaak @lucapinello Congratulations Ming!

Just got the notice that the second step of my green card was approved (I485). I am glad to finally get it after 12 years in the US. I am grateful to @roelverhaak, @lucapinello, Liang Cheng, Istvan Albert, and Praveen Sethupathy for writing the reference letters. Thanks all!

@tangming2005 In addition to @reskejak suggestions, how about fitting a linear model (+batch effect can also be controlled; if any)?

what test is appropriate for testing the difference between two groups of percentages? #rstats I see many scRNAseq papers compare the composition of the cell types.

@tangming2005 Monocle has gene modules identification function for trajectory analysis, but I don't know if that can be considered for cluster specific modules: find_gene_modules()

What are the marker gene idenfication methods are there for scRNASeq data? Not only the differential genes but also the combination of genes to define a cluster(cell type).

@tangming2005 singleR Cibersort

what reference-based single-cell RNAseq annotation methods are there? how is the performance?

#IOTNMoonshot has released the Bioconductor IOTN suite, which includes over 450 @Bioconductor software and workflow for a wide range of state-of-the-art analyses for genomic, phenotypic and functional assays in immune-oncology studies. iotnmoonshot.org/en/resources/b…

@cgihou Dear CGI Houston: Thank you for your prompt reply. I highly appreciate your time! Thank you, Harsh

@cgihou Are the miscellaneous services affected by Harvey hurricane? I'd like to send a package belonging to miscellaneous services. Thanks