Jiarui Ding

168 posts

Jiarui Ding

Jiarui Ding

@JiaruiDing

Computational Biology, Machine Learning, Cancer Biology, Food Allergy Talk is cheap, show me the code - Linus Torvalds

Vancouver, BC Katılım Haziran 2015
803 Takip Edilen349 Takipçiler
Jiarui Ding retweetledi
UBC Computer Science
UBC Computer Science@UBC_CS·
UBC Computer Science invites applications for up to two full-time tenure-track positions with the following priority areas: visualization, robotics, reinforcement learning, data management, and data mining. Applications are due Wed Dec 10, 2025. cs.ubc.ca/our-department…
UBC Computer Science tweet media
English
0
11
16
5.7K
Jiarui Ding
Jiarui Ding@JiaruiDing·
Nice study and interesting! We also identified a similar subset of dendritic cells, which we called CDC2C (PRDM16+), in the human esophagus (nature.com/articles/s4146…). From analyzing public data, we found these cells in the brain, colon, and two cross-tissue scRNA-seq datasets.
Ranjan Upadhyay@RanjanMDPhD

Check out this incredible study from the #LittmanLab @nyulangone @nyugrossman dissecting the origin of peripherally induced Tregs in the gut, with broad implications for therapies for autoimmune diseases! Co-led by Rabi Upadhyay, no biases here

English
0
0
2
945
Jiarui Ding retweetledi
Waggoner Lab
Waggoner Lab@LabWaggoner·
An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission @RegevAviv @TheXavierLab @JiaruiDing @NatureComms nature.com/articles/s4146…
Waggoner Lab tweet media
Jiarui Ding@jiarui_ding

ScPhere (w/ Aviv Regev @broadinstitute @MITBiology @kochinstitute @HHMINEWS, now @genentech) was published @NatureComms nature.com/articles/s4146…. ScPhere (pronounced “sphere”, Aviv coined this word & pronunciation) embeds cells into non-Euclidean spaces and addresses batch effects

Română
0
6
11
3.1K
Jiarui Ding retweetledi
Ludwig Cancer
Ludwig Cancer@Ludwig_Cancer·
Bert Vogelstein's work has shaped our understanding of the molecular basis of cancer. Now his team at Ludwig Johns Hopkins is racing to test a treatment to prevent #COVID19 deaths, even as it advances a powerful new technology for early cancer detection. bit.ly/3d1XaWk
Ludwig Cancer tweet media
English
2
4
8
0
Jiarui Ding retweetledi
Evgenij Fiskin
Evgenij Fiskin@EvgenijFiskin·
Very excited to share our preprint introducing PHAGE-ATAC, a multiomic assay for combined protein and accessible chromatin readout using engineered bacteriophages via @10xGenomics droplet-based single-cell ATACseq. #PHAGEATAC biorxiv.org/cgi/content/sh…
English
2
31
101
0
Jiarui Ding retweetledi
Prof. Akiko Iwasaki
Prof. Akiko Iwasaki@VirusesImmunity·
Are you confused about the role of type I interferons (IFN) in #SARS_CoV_2 infection? Here is my speculation on what makes IFN-I helpful vs. harmful in #COVID19 patients - it comes down to timing and dose. A short thread. All figures made by @BioRender & @annsea_park (1/n)
Prof. Akiko Iwasaki tweet media
English
45
740
1.7K
0
Dmitry Kobak
Dmitry Kobak@hippopedoid·
So here is how to make t-SNE 💔-shaped. In t-SNE, all points are initialized close to 0. Gradient descent lets similar points attract and distant repulse; the embedding slowly expands. I constrain it to stay within the heart: points are not allowed to penetrate the boundary.
GIF
English
5
25
124
0
Jiarui Ding
Jiarui Ding@JiaruiDing·
@hippopedoid Good for a Valentine's day card :) I think you can do this in two ways, one is trivial simply by post-processing after convergence, one is by constraining the embedding during optimization.
English
0
0
6
0
Dmitry Kobak
Dmitry Kobak@hippopedoid·
Weird enough, I now have over 2^10 followers here on Twitter despite writing almost exclusively about t-SNE ;-) So here is a ❤️-shaped t-SNE embedding of MNIST. Can you guess how I made it? Explanation tomorrow.
Dmitry Kobak tweet media
English
9
37
627
0

Keşfet

@CellGenomics @ubcscience @ScienceVancity @UBC_CS @CellRepMethods @NatureComms @UBC @RegevAviv