Stefan Peidli
49 posts
@SPeidli
German single-cell nerd
"scPerturb: harmonized single-cell perturbation data" is out now in Nature Methods!
#datavzrd, our tool for rendering modern interactive, visual, server-free, tabular scientific HTML reports with zero/low-code (datavzrd.github.io), now has a tutorial (1-2h): datavzrd.github.io/docs/tutorial.….
"scPerturb: harmonized single-cell perturbation data" is out now in Nature Methods!
What drives severe COVID-19? In our new preprint, we explore this question using and interspecies comparison of lung single-cell RNA-seq data – summary in the thread below, lead by @SPeidli and Samantha Praktiknjo! … (1/7)
I’m quite used to the cruelty students can face when they apply for a US visa but this one broke me. We offered admission to a stellar, talented & hardworking student. After months of work and hundreds of dollars, an embassy officer saw him for 5 mins & said no. why? …
Clustering algorithms report clusters even when none exist. In single-cell RNA-Seq pipelines, novel cell types are often identified by clustering algorithms. Expanding on Kimes et al.'s work, we introduce significance analysis for single-cell RNA-Seq data: nature.com/articles/s4159…
We are delighted to announce that @mo_lotfollahi is joining us. Mo is an accomplished researcher developing cutting-edge ML algorithms to understand, predict and engineer cellular behaviours, with an emphasis on their applications in drug discovery using single-cell technologies
