Metrichor

@zerojinx @nanopore @DrCuff First customer use was a year earlier than that, in 2013, in a basement lab in Boston for an invitation-only special event during ASHG

We've just updated our EPI2ME and MinKNOW #SARSCoV2 analysis workflows to improve our support for #Omicron variant detection. Find out more in this Community post (login required):bit.ly/3yMrT4F

Happily getting our @nanopore #sequencing analyzed in #Epi2me

This week in 2015, EPI2ME debuted at WIRED Health with an equine health example

Freshly published: v0.1.4 of our StencilJS web component library for Nextclade phylogenetics visualisation, used as part of our ARTIC/Nextclade workflow for COVID19. You can find it at @metrichor/nextclade" target="_blank" rel="nofollow noopener">npmjs.com/package/@metri…

@kejames @nanopore Hi Karen. With Rosetta2 there shouldn’t be any issues with EPI2ME but we’re still rolling out M1 across our dev & test systems for native builds & support. Working on official documentation

Seven years ago this week, the first EPI2ME runs happened, on-prem, in our lab in Boston, for 50 invited guests performing their first Nanopore sequencing experiments

NEW @metrichor #epi2me Desktop Agent v3.1.3 Run *MULTIPLE ANALYSES* at the same time! Read about other exciting features in our @nanopore community pages community.nanoporetech.com/posts/epi2me-a…

Mr van Ginkel introduced nano technology to 2V & looked at DNA & how we can sequence this using the nano technology. 2V extracted DNA from strawberries & made a simple centrifuge to extract micro organisms from the soil. @nanopre @metrichore @glenveegee #nanotechnology #DNA

Our very own @glenveegee showcasing @nanopore and inspiring the next generation at @NewHallSchool this evening

@ReindertN Apologies for the delays to analyses. We’ve been experiencing some capacity scaling-responsiveness problems in Europe today due to high demand but we do expect things to settle shortly

Unfortunately, @metrichor WIMP analysis is letting us down and has not yet given results. Quick manual blasting showed genomic reads of Lactobacillus crispatus and Gardnerella vaginalis, but we expect a third species...

Did some @nanopore #MinION sequencing with @ryhertzberger today. Used the Field kit (SQK-LRK001) on a genomic DNA sample of vaginal microbiome bacteria. 1h21min from arrival @wur to first sequences.

@laura_boykin Always happy to talk. Many of the most popular EPI2ME tools are not for Human

The company/person/people who makes a user friendly software to analyze nanopore data (BEYOND HUMAN) will push the field forward. Seriously navigating what software to use and how to use it is hours and hours of frustration.

Did you know, you can install both epi2me-cli and epi2me-agent using Homebrew on MacOSX! "brew tap nanoporetech/tap" — more info at github.com/nanoporetech/h…

Our favourite feature in the 2019.7 Agent & CLI releases is that your uploaded files are no longer moved around during the course of a run! The apps keep a little local sqlite3 database to track upload progress.

The team is pleased to announce the 2019.7 releases of both EPI2ME Agent and EPI2ME CLI. Find them both at the downloads page epi2me.nanoporetech.com/download and more info at community.nanoporetech.com/posts/epi2me-a…

Got first @nanopore Flongle flowcells since late 2018 - gave them a try using our respiratory metagenomics pipeline biorxiv.org/content/10.110…. >70k reads (200Mb) in 2hr. K. oxytoca was top hit - the pathogen reported by clin micro lab. Flongle looking good for clin metagenomics!

This is a taiyaki, and this is our taiyaki, github.com/nanoporetech/t…

@Psy_Fer_ @pathogenomenick @rrwick Not an exposed parameter in EPI2ME yet, but yes. Come and see @philres1 on the EPI2ME stand :)

@metrichor @pathogenomenick @rrwick Can we define the barcodes with inputs?

Porechop from @rrwick being used left right and centre in nanopore pipelines. Now abandoned. What's going to take over this need? #nanoporeconf

@pathogenomenick @Psy_Fer_ @rrwick Nothing against porechop Nick - qcat is the demuxer used in EPI2ME. We thought the community might like to have it as well :)

@Psy_Fer_ @rrwick I noticed there's a new demultiplexer on the nanopore Github: github.com/nanoporetech/q… But ... porechop still works fine!

@CallumJCParr Hi Callum. One of the analysis components is likely to have balked at the file size here. EPI2ME real time works much better with batches of smaller files if you can give that a go. The team are aware of the issue and it's a priority to fix.