Bendall Lab

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Bendall Lab

Bendall Lab

@Bendall_Lab

Single Cell Proteomics Lab @StanfordMed @StanfordPath & @StanfordImmuno. Hematopoiesis, Stem Cells, Immunity, Neurodegeneration. 🇨🇦

Stanford, CA เข้าร่วม Eylül 2018
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Bendall Lab
Bendall Lab@Bendall_Lab·
Maybe because we almost never write papers the way the actual scientific process was done - looks like LLMs do have to go to grad school and experience some “most experiments don’t work” feedback
Alex Prompter@alex_prompter

This paper from Harvard and MIT quietly answers the most important AI question nobody benchmarks properly: Can LLMs actually discover science, or are they just good at talking about it? The paper is called “Evaluating Large Language Models in Scientific Discovery”, and instead of asking models trivia questions, it tests something much harder: Can models form hypotheses, design experiments, interpret results, and update beliefs like real scientists? Here’s what the authors did differently 👇 • They evaluate LLMs across the full discovery loop hypothesis → experiment → observation → revision • Tasks span biology, chemistry, and physics, not toy puzzles • Models must work with incomplete data, noisy results, and false leads • Success is measured by scientific progress, not fluency or confidence What they found is sobering. LLMs are decent at suggesting hypotheses, but brittle at everything that follows. ✓ They overfit to surface patterns ✓ They struggle to abandon bad hypotheses even when evidence contradicts them ✓ They confuse correlation for causation ✓ They hallucinate explanations when experiments fail ✓ They optimize for plausibility, not truth Most striking result: `High benchmark scores do not correlate with scientific discovery ability.` Some top models that dominate standard reasoning tests completely fail when forced to run iterative experiments and update theories. Why this matters: Real science is not one-shot reasoning. It’s feedback, failure, revision, and restraint. LLMs today: • Talk like scientists • Write like scientists • But don’t think like scientists yet The paper’s core takeaway: Scientific intelligence is not language intelligence. It requires memory, hypothesis tracking, causal reasoning, and the ability to say “I was wrong.” Until models can reliably do that, claims about “AI scientists” are mostly premature. This paper doesn’t hype AI. It defines the gap we still need to close. And that’s exactly why it’s important.

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Bendall Lab
Bendall Lab@Bendall_Lab·
Another long incubating research baby has been born in the lab. Thank you 🙏 @parkerici @CancerResearch @CIHR_IRSC @TheGMSP for supporting the research and lead authors!
Hadeesha Piyadasa@HadeeshaP

🧵 (1/8) Today, @BenOberlton and I are excited to share the preprint of our work on: A comprehensive multi-omic study of human gliomas, spanning diagnosis, treatment, and recurrence. We address the longstanding challenge of developing effective therapies for gliomas, which have shown limited response to immunotherapy and targeted treatments compared to other malignancies. #GliomaResearch #NeuroOncology #CancerImmunotherapy biorxiv.org/content/10.110…

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Bendall Lab
Bendall Lab@Bendall_Lab·
Congratulations Garry!!
GIF
Garry P. Nolan@GarryPNolan

I am deeply honored to be named by the Stanford Medicine Alumni Association this year for the “Arthur Kornberg and Paul Berg Lifetime Achievement Award in Biomedical Sciences.” As a Stanford graduate student in the 1980s, I took a remarkable class in plasmid and phage replication from Dr. Kornberg. I marveled at his incisive manner of teaching complex concepts in science. I learned fundamentals of retroviral gene transfer from postdoctoral fellows and technical staff in Dr. Berg’s laboratory. I was in constant awe of Dr. Berg’s statesmanship on the world stage as a spokesman for science. Arthur Kornberg, M.D. and Paul Berg, Ph.D. were luminaries long before I was a graduate student. Professor Kornberg won the Nobel in Physiology or Medicine for isolating DNA polymerase and demonstrating how it could replicate DNA in a test tube. Professor Berg won the Nobel in Chemistry by showing the first inter-species DNA hybrid of bacterial and eukaryotic viral DNA and replicating it in bacteria. Professor Berg was instrumental in pointing out the dilemmas around recombinant DNA at the foundational Asilomar Conference in 1975, a critical meeting focusing on the ethical uses of rec-DNA technology. Dr. Kornberg’s and Dr. Berg’s efforts deeply touched biomedical sciences and helped patients worldwide. They symbolized science's dual role in fundamental discovery and service to humanity.

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Bendall Lab
Bendall Lab@Bendall_Lab·
A great opportunity to do all the spatial-omics at Stanford!
Guolan Lu@GuolanLu

Please RT. I am currently hiring graduate students and postdoc fellows. Details can be found here: postdocs.stanford.edu/prospective/op… My lab is dedicated to developing and integrating imaging, AI, and spatial omics technologies to uncover mechanisms driving disease initiation, progression, and therapeutic response, with the ultimate goal of advancing next-generation theragnostics to cure diseases. We are excited to be equipped with cutting-edge spatial omics technologies, including Xenium spatial transcriptomics @10xGenomics and Phenocycler-fusion @AkoyaBio .

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Candace Liu
Candace Liu@CandaceCLiu·
We ended Day 2 of #SBS24 with a very lively poster session. Thank you to all of our presenters!
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Bendall Lab
Bendall Lab@Bendall_Lab·
Blackbelt🥋level functional assays for human lymphoid cell potential establishing new model of human hematopoietic differentiation and significant new source of LMPPs. Single cell and limiting dilution assays with multi-lineage readout. All 7⃣ peer reviewers agreed! 🤯
YeEun Kim@YeEun_Kim__

Our human multipotent lymphoid progenitor paper is finally out! nature.com/articles/s4146… After revision, we added more in vitro validations of the lympho-myeloid potential of this HSPC population. Lots of thanks to @Bendall_Lab & @WJGreenleaf

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Candace Liu
Candace Liu@CandaceCLiu·
Join us for our 3rd Annual Spatial Biology Summit this September at Stanford! Register by 7/12 for the early bird registration fee. We have an EXCELLENT lineup of speakers covering the spatial biology spectrum. More info here: angelolab.com/spatial-biolog… @MikeAngeloLab @Bendall_Lab
Candace Liu tweet media
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