Orly Alter

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Orly Alter

Orly Alter

@OrlyAlter

USTAR Assoc. Prof. @UUtah & CSO & Co-Founder, @PrismAIThera peutics, Inc.; @Stanford & @TelAvivUni alumna; my opinions

เข้าร่วม Ocak 2020
1.8K กำลังติดตาม1.9K ผู้ติดตาม
Orly Alter
Orly Alter@OrlyAlter·
Tuesday 10/22 at 3:30pm in Room 251 DE, join the 2nd Rapid Fire Session on Making #Data Work for Us at #PharmSci360 in SLC! I will present the #PrecisionMedicine platform we are building at our @UUtah spin-off @PrismAIThera peutics, Inc., and our multi-tensor AI/ML powering it. cdmcd.co/va69jd Title: AI/ML-Derived Biomarkers from Small-Cohort and Noisy, High-Dimensional Multi-Omic Clinical Data Abstract: Prediction in medicine remains limited. The entire multi-ome affects cancer and other diseases. And, unlike typical #ArtificialIntelligence and #MachineLearning (#AI / #ML), e.g., neural networks and deep learning, our multi-tensor AI/ML is uniquely able to identify actionable and mechanistically interpretable biomarkers from multi-omic clinical data. We have been developing the algorithms, i.e., the "multi-tensor comparative spectral decompositions," to extend the mathematics that underlies #quantum mechanics to overcome the limitations of typical AI/ML. We demonstrated the algorithms in the discovery and validation of biomarkers in, e.g., astrocytoma, including glioblastoma (GBM), brain, lung, nerve, ovarian, and uterine cancers. The algorithms identified the biomarkers repeatedly, in federated and imbalanced public datasets from as few as 50–100 patients each, showing that the algorithms are batch- and demographics-agnostic, and the biomarkers are actionable in the general population. The GBM biomarker, the first to encompass the whole genome, was additionally prospectively and retrospectively experimentally validated to be the most accurate and precise predictor of survival and response to treatment. All other attempts to associate a GBM tumor’s DNA copy-number alterations with the patient’s outcome failed, establishing that the algorithms find what all others miss, and the biomarkers outperform all others where they exist. Recent experiments show that the GBM biomarker correctly identified previously unrecognized drug targets, i.e., genes that are required for the tumor’s cell proliferation and viability, further validating the mechanistic interpretability of the multi-tensor AI/ML. Let’s cure #cancer and other diseases together! @HuntsmanCancer @AAPSComms @NCIPhySci @UtahCOE @UTechLicensing @BioUtah @UUSCI @UtahBME @AltitudeLab @UtahCGM @OneU_RAI #DataScience #MultiTensorDecompositions #SingularValueDecomposition
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Orly Alter
Orly Alter@OrlyAlter·
Friday 9/20 at 2:30pm, join the panel on #AI for #Pediatric #Cancer at the 2024 #BrainStormSummit in DC! I will discuss the platform we are building at our @UUtah spin-off, and our multi-tensor AI/ #ML underlying it. The @PrismAIThera peutics, Inc. platform is uniquely able to accelerate #PrecisionMedicine. The multi-tensor AI/ML is uniquely able to identify actionable and mechanistically interpretable predictors from small-cohort and noisy, high-dimensional multi-omic clinical data. Let’s partner up to cure the most devastating diseases! #ArtificialIntelligence #Biomarkers #BrainCancer #DataScience #MachineLearning #MultiTensorDecompositions #SingularValueDecomposition @brainstormsmt @HuntsmanCancer @NCIPhySci @OneU_RAI @UofUNeurosurg @UtahBME @UtahCGM @UtahCOE @UTechLicensing @UUSCI @JesTsai
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Jessica Tsai, MD, PhD
Jessica Tsai, MD, PhD@jestsai·
Awesome and truly multi-disciplinary collaboration with @OrlyAlter - mathematics, physics, and machine learning meets cancer biology and functional genomics! 2/
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Jessica Tsai, MD, PhD
Jessica Tsai, MD, PhD@jestsai·
Thankful to the Musella Foundation and @StacheStrong for funding our proposal: Experimental validation of AI/ML-identified therapeutic targets in glioblastoma! 🧠 1/
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AVCX Trivia
AVCX Trivia@AvcxTrivia·
Congratulations to Dave Oberman (@daveoberman) on being the reigning AVCX All Questions Correct Answer Getter! Here's a question from Dave: If it were an independent country, which Indian state would be the fifth-most populous country in the world? Like and rt if you know!
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Orly Alter
Orly Alter@OrlyAlter·
Meet Asaf Zviran & me, representing @UUtah spinoff @PrismAIThera peutics at #ASCO24! Our platform is your operating system for drug development, biomarker discovery, & #ClinicalTrials, & our team is on a mission to accelerate your precision therapeutics! Typical AI cannot generate effective biomarkers, or predictors, from your real-life, small-cohort, & noisy, multi-omic data. But #PrismAI can! And with #PrismAIInside, your biotech company & health system can too! Our AI extends the mathematics that underlies #quantum mechanics to overcome the typical AI limitations. Our algorithms (i) compare & integrate any data types, of any number & dimensions, & (ii) scale with data sizes. Our models (iii) are interpretable in terms of known biology & batch effects & (iv) correctly predict previously unknown mechanisms. Our prospective & retrospective validation of a genome-wide pattern of DNA copy-number alterations in brain tumors proved that the models discover biomarkers, or predictors, of survival & response to treatment that are (v) the most accurate & precise, (vi) clinically actionable in the general population based upon as few as 50–100 patients, & (vii) are consistent across studies & over time. On Saturday 6/1 from 12:30pm online & at 1:30–4:30pm in Hall A, join me as I discuss two recent @NCIPhySci -funded projects demonstrating the power of our platform. a. #AI / #ML-Derived Mechanistically-Interpretable Whole-Genome #Biomarkers of Patient Survival in Pre-Treatment Primary #Neuroblastoma Tumors & Whole Blood; meetings.asco.org/abstracts-pres… b. Prospective #Validation from a Retrospective Trial That Validated an AI/ML-Derived Whole-Genome Biomarker as the Most Accurate & Precise Predictor of Survival & Response to Treatment in #Glioblastoma; meetings.asco.org/abstracts-pres… Thanks as always to our fantastic collaborators, @JesTsai, @PriyaPonnapalli, Elizabeth Newman, Penelope Miron, @KristyLSMisk, @KristinWaite, @NSosonkina, Sara Coppens, Anthony Bryan, @EstevanKiernan, Huanming Yang, Jay Bowen, @GhunwaNakouzi, @NCIJBSloan, Andrew Sloan, & Tiffany Hodges, our amazing program managers, @Nas_Zahir, David Miller, @EMJChavarria, @SEHanlon, & Jennifer Couch, the awesome team at @AltitudeLab, @Chandanananana, Kapil Sharma, & Lauryn Narramore, & the wonderful team at @UTechLicensing, Aaron Duffy, & Eric Paulsen! Reach out to us to schedule a meeting! @UUSCI @HuntsmanCancer @UtahCGM @UtahBME @UtahCOE @UofUNeurosurg @OneU_RAI #ArtificialIntelligence #DataScience #MachineLearning #BrainCancer #Cancer #PrecisionMedicine #Research
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Jessica Tsai, MD, PhD
Jessica Tsai, MD, PhD@jestsai·
Super awesome @OrlyAlter! Grateful to be your collaborator and wish I could check this out in person!
Orly Alter@OrlyAlter

Wednesday 4/24 from 1pm on, join my #Genomic #SignalProcessing Lab as we celebrate 30 years of @UUSCI at the @UUtah on the 3rd floor of WEB– lnkd.in/giJRAbmw We will present two of our @NCIPhySci-funded projects: a. #AI/#ML-Derived Mechanistically-Interpretable Whole-Genome #Biomarkers of Patient Survival in Pre-Treatment Primary #Neuroblastoma Tumors & Whole Blood; & b. Prospective #Validation from a Retrospective Trial That Validated an AI/ML-Derived Whole-Genome Biomarker as the Most Accurate & Precise Predictor of Survival & Response to Treatment in #Glioblastoma. Thanks to our amazing collaborators, including @JesTsai, @PriyaPonnapalli, Elizabeth Newman, Penelope Miron, @KristyLSMisk, @KristinWaite, @NSosonkina, Sara Coppens, Anthony Bryan, @EstevanKiernan, Huanming Yang, Jay Bowen, @GhunwaNakouzi, @NCIJBSloan, Andrew Sloan, & Tiffany Hodges! Thanks to our supportive program managers, including @Nas_Zahir, David Miller, @EMJChavarria, @SEHanlon, & Jennifer Couch! Thanks also to our photographing colleague @NCIKenAldape at @AACR: #BrainCancer (Minneapolis, MN, October 19–22, 2023); lnkd.in/grRt43Bd RSVP– lnkd.in/gRpuhiSS @TheNCI @HuntsmanCancer @UtahCOE @UtahBME #ArtificialIntelligence #DataScience #MachineLearning #BrainCancer #Cancer #PrecisionMedicine #Research

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Lior Pachter
Lior Pachter@lpachter·
It's been great to see the positive response of @satijalab & @fabian_theis to our preprint biorxiv.org/content/10.110… on Seurat & Scanpy, and their commitment to work to improve transparency of their tools. One immediate benefit will be better practice of PCA in genomics. 1/🧵
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Orly Alter
Orly Alter@OrlyAlter·
Wednesday 4/24 from 1pm on, join my #Genomic #SignalProcessing Lab as we celebrate 30 years of @UUSCI at the @UUtah on the 3rd floor of WEB– lnkd.in/giJRAbmw We will present two of our @NCIPhySci-funded projects: a. #AI/#ML-Derived Mechanistically-Interpretable Whole-Genome #Biomarkers of Patient Survival in Pre-Treatment Primary #Neuroblastoma Tumors & Whole Blood; & b. Prospective #Validation from a Retrospective Trial That Validated an AI/ML-Derived Whole-Genome Biomarker as the Most Accurate & Precise Predictor of Survival & Response to Treatment in #Glioblastoma. Thanks to our amazing collaborators, including @JesTsai, @PriyaPonnapalli, Elizabeth Newman, Penelope Miron, @KristyLSMisk, @KristinWaite, @NSosonkina, Sara Coppens, Anthony Bryan, @EstevanKiernan, Huanming Yang, Jay Bowen, @GhunwaNakouzi, @NCIJBSloan, Andrew Sloan, & Tiffany Hodges! Thanks to our supportive program managers, including @Nas_Zahir, David Miller, @EMJChavarria, @SEHanlon, & Jennifer Couch! Thanks also to our photographing colleague @NCIKenAldape at @AACR: #BrainCancer (Minneapolis, MN, October 19–22, 2023); lnkd.in/grRt43Bd RSVP– lnkd.in/gRpuhiSS @TheNCI @HuntsmanCancer @UtahCOE @UtahBME #ArtificialIntelligence #DataScience #MachineLearning #BrainCancer #Cancer #PrecisionMedicine #Research
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UtahBME
UtahBME@UtahBME·
📣BME Seminar Speaker📣 Friday, March 15th - 11:45 am - SMBB Auditorium 2650 "Predicting Immunogenic Neoepitopes in Cancers" Rachel Karchin, Ph.D. For more information on this and future seminars, please visit the Recent News link in our bio. See you there! #utahbme
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Jessica Tsai, MD, PhD
Jessica Tsai, MD, PhD@jestsai·
Day 1️⃣ of the Tsai Lab @ChildrensLA today! So grateful to be here and stoked to get the science started! 🧫🧬🧠
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Orly Alter
Orly Alter@OrlyAlter·
#HappyBirthday, #GeneGolub – a hero, a mentor & a friend – on your 23rd! Thank you for your awesome collaboration on the #comparative #spectral #decompositions, our #quantum mechanics-inspired #multi-#tensor generalizations of the singular value decomposition! youtu.be/vy8UZftSXKI via @YouTube @DynamicsSIAM @ICERM @ILAS_News @SIAMLA @UUSCI @UUtah #AI #ArtificialIntelligence #DataScience #MachineLearning #ML #MultiTensorDecompositions #SingularValueDecomposition
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Jessica Tsai, MD, PhD
Jessica Tsai, MD, PhD@jestsai·
I am truly thrilled to announce that I will start as a tenure track Assistant Professor at Children's Hospital Los Angeles in the Cancer and Blood Disease Institute and Keck School of Medicine in March 2024! 🧠1/
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