Kelly Schiabor Barrett

436 posts

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Kelly Schiabor Barrett

Kelly Schiabor Barrett

@kellyschiabor

ABQ Born, Duke '09, Berkeley '15. Research scientist @my_helix interested in genomes and people. Comments are my own.

San Diego, CA Bergabung Haziran 2009
626 Mengikuti186 Pengikut
Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
I was excited to see genetics and common disease prevention highlighted in the @nytimes, but an important class of human variation was not discussed, so we decided to write a bit about it 👇🏼
Helix@my_helix

#OnTheBlog: While a recent @nytimes article highlighted the use of Polygenic Risk Scores for heart disease prevention, @cassiehajek, Helix's Medical Director, shares how testing for rare variants before or alongside PRS leads to enhanced preventive care: bit.ly/44borPw

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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
@BiotechInvestNG @my_helix For this analysis, we look specifically at TTN truncating variants in exons constitutively expressed in cardiac tissue (hiPSI TTNtvs), which are found in about 0.5% of individuals in an unselected population cohort
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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
Introducing our new genetics 🧬 method, “Power Window”, lead by the stats genius @ETCirulli , for both discovering and refining *within* gene rare variant associations in populations. The key insight comes from defining association windows by statistical power- read more below 👇🏼
Liz Cirulli@ETCirulli

Thrilled to present @my_helix paper ID'ing the rare variants/regions w/in genes responsible for the statistical associations seen in gene-based collapsing analyses. Key innovation is to slide window not by # bases or variants, but by statistical power. 1/ medrxiv.org/content/10.110…

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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
@wayneriekhof Yep! @mbeisen and I did a whole series of experiments with various BY knockouts and others-definitely created some interesting stuff, but found it to be more dependent on the media (esp. nitrogen) supplementations. Watch out for sulfur off flavors 🍻
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Wayne Riekhof
Wayne Riekhof@wayneriekhof·
Has anyone tried brewing beer with a lab yeast strain? BY474x? W303? SEY621x? The lab group chat has turned to speculation about what bread or beer made with S288c derivatives would taste like. Anyone?
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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
@hwillardX Thinking about you and your advisor- know his legacy and spirit lives on through you and all your mentees
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Hunt Willard
Hunt Willard@hwillardX·
I am crushed by the news that Leon Rosenberg, my PhD advisor at Yale and my lifetime mentor, passed away this afternoon. I can't easily describe the impact he had on me, my career, and the field of human genetics. Almost 50 yrs of mentorship. I'm just crushed.
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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
Certain genetic variants in the gene TTN (present in ~1/200 ppl) often underlie progressive heart failure, but genetic testing for this gene has been limited as the risk has been hard to quantify. We discover a path forward for assessing risk in our recent preprint, described👇🏼
Helix@my_helix

@ETCirulli and @kellyschiabor have provided evidence for the first population-level screening method with #clinicalutility for #cardiomyopathies. Read more about our "power window" #populationgenomics technique in this @GenomeWeb article: bit.ly/3ImmOoB

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Jessica Chong
Jessica Chong@jxchong·
Looking forward to moderating this journal club next week from @alexbolze @ETCirulli and team! Combining my two current obsessions - work and Covid vaccines - sorry to all geneticists for bombing your timelines with vax for u5s chatter lately 😂
ASHG@GeneticsSociety

The June Journal Club is next Wednesday at noon Eastern 📝 Alexandre Bolze, PhD, will discuss his research identifying genetic factors that help explain differences in reactions following #COVID19 vaccination with the Pfizer-BioNTech BNT162b2 vaccine: learning.ashg.org/products/genet…

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Greg Findlay
Greg Findlay@TheGenomeLab·
An important study by @kellyschiabor @hwillardX et al. looking at clinical outcomes in patients with BRCA1 variants predicted to be pathogenic by our Saturation Genome Editing data... Hope this leads to better management for patients in this and other cohorts.
Kelly Schiabor Barrett@kellyschiabor

🧵on our #OA article at @HGGAdvances “Clinical Validation of genomic functional screen data: analysis of observed #BRCA1 variants in an unselected population cohort” in collab with the incredible @MyCode and co-authors @AdamBuchanan76, @hwillardX, @masnick bit.ly/3MKZAKo

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StatMuse
StatMuse@statmuse·
Happy Basketball #PiDay
StatMuse tweet media
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Alexandre Bolze
Alexandre Bolze@alexbolze·
Curious about Delta-Omicron recombinants? Our study 👏 @shishiluo @my_helix: medrxiv.org/content/10.110… Co-circultation of both variants 20 samples with co-infections Evidence of a few recombinations in co-infections & 2 infections with 100% recombinant Details in 🧵
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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
I hope to continue to leverage clinico-genomic population datasets to help validate more functional variant screens of well-established gene-disease associations– please send along your favorite examples!
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Kelly Schiabor Barrett
Kelly Schiabor Barrett@kellyschiabor·
Overall, our analysis supports the amazing work of @TheGenomeLab and @lea_starita with clinical evidence in one of the most likely use cases: population genomics risk screening and demonstrates the power of functional genomics for advancing variant interpretation.
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