Ariax Bio

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Ariax Bio

Ariax Bio

@AriaxBio

World-class AI-powered protein design tools like BindCraft and BoltzGen, no-code UI, and instant GPUs—30% cheaper than AWS. Just pay for compute.

Katılım Nisan 2025
105 Takip Edilen728 Takipçiler
Ariax Bio retweetledi
Ariax Bio retweetledi
Adaptyv Bio
Adaptyv Bio@adaptyvbio·
What happened in the Nipah Protein Design Competition so far? Plus: Prediction markets for protein design TLDR: • We hosted our third installment of the Protein Design Competition on @proteinbase, this time challenging participants to design a binder against the Nipah virus glycoprotein. • The response was incredible: Over 10’000 designs were submitted, over 5 times the number of designs in the past 2 competitions combined, with more than 650 total participants. • We’re currently testing all 1’200 selected designs, but, in the meantime, we’re taking a brief detour into what happened during the competition. Which model was the fan favorite? What did the top-ranking designs look like? And how can we select a better ranking metric for future competitions? • Plus, we opened a prediction market on Manifold for this competition so you can bet on hit rates, best performing models, and more
Adaptyv Bio tweet mediaAdaptyv Bio tweet mediaAdaptyv Bio tweet mediaAdaptyv Bio tweet media
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Ariax Bio
Ariax Bio@AriaxBio·
Curious how to run BoltzGen? Our new tutorial walks through the complete workflow using our Adaptyv Nipah Competition submission as a real-world example. Target prep, hotspot selection, and launching parallel VHH/miniprotein campaigns. Full tutorial: ariax.bio/resources/bolt…
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Ariax Bio
Ariax Bio@AriaxBio·
New GPUs on Ariax: Nvidia B300 + RTX 6000 Pro now live. B300 delivers a major performance jump for large/time-critical protein design campaigns. RTX 6000 Pro brings high VRAM for phenomenal value. BindCraft already runs on B300; BoltzGen support soon. ariax.bio/resources/new-…
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Ariax Bio
Ariax Bio@AriaxBio·
Open source strikes back! BoltzGen delivers Chai-2 level antibody design performance under an MIT license. Design nanobodies (VHH), cyclic-peptides, helicons, and miniproteins with an all-atom framework. Run it now without limits on Ariax. ariax.bio/resources/bolt…
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Ariax Bio retweetledi
GAMA Miguel Angel 🐦‍⬛🔑
1/2 We're now living the dream of (almost) fully programmable protein design. Learning about BindCraft is now essential 🧐 x.com/miangoar/statu… Code to complex: AI-driven de novo binder design pubmed.ncbi.nlm.nih.gov/40897171/ Thanks to @MartinPacesa, Lennart N., and @AriaxBio :)
GAMA Miguel Angel 🐦‍⬛🔑@miangoar

1/13 🧵 Today, Bindcraft was published in @Nature , one of the most famous AIs in biology for designing protein–protein interactions (PPI). In my opinion. Bindcraft represents one of the most important advances in the post–AlphaFold2 era.

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Ariax Bio retweetledi
Martin Pacesa
Martin Pacesa@MartinPacesa·
We were so excited to meet and discuss with the protein community in Mexico, it was a great experience and we saw many great BindCraft designs generated in just one day session! Thanks to @aaronmring’s amazing @AriaxBio platform that made running it easier with so many teams
GAMA Miguel Angel 🐦‍⬛🔑@miangoar

1/2 🧵 We're learning how to use BindCraft at the Center for Genomic Sciences in Mexico 🇲🇽 BindCraft achieves an experimental success rate of 10–100%, compared to the 0.2% for traditional approaches 🔥 When people talk about drug design, they're actually referring to this.

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Ariax Bio
Ariax Bio@AriaxBio·
We also shipped project cloning: reuse any job's settings as a template for variations. Test different hotspots, adjust filters, or simply get more designs without re-entering everything. Both features are live now.
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Ariax Bio
Ariax Bio@AriaxBio·
Waiting days for BindCraft results? Not anymore. Turbo Mode splits your job across multiple GPUs for up to 8x faster completion. A typical 48-hour campaign now finishes in 6 hours: ariax.bio/resources/turb…
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Ariax Bio
Ariax Bio@AriaxBio·
@BioExplorr We use NGL Viewer (nglviewer.org) extensively on our platform, in the prep inputs feature and elsewhere. It's robust, lightweight, and easy to use.
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Ryan Bailey
Ryan Bailey@BioExplorr·
@AriaxBio Beautiful software. Wow. What structure viewer is that?
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Ariax Bio
Ariax Bio@AriaxBio·
Preparing PDB files for protein design usually means wrestling with PyMOL or ChimeraX. We're making it easier. Watch us use our new Prep Inputs feature to go from PDB fetch → structure trimming → hotspot selection → launching a design job in a leisurely 75 seconds.
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Ariax Bio
Ariax Bio@AriaxBio·
@MartinPacesa Thanks Martin! BindCraft has been transformative for the field... it deserved a GUI!
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Ariax Bio
Ariax Bio@AriaxBio·
Prep Inputs handles the tedious parts: Load structures from RCSB or local files (PDB or CIF) Trim chains & residues visually Auto-detect binding interfaces Export BindCraft-ready PDBs or start the job at Ariax Free to use and everything runs locally in your browser.
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Ariax Bio retweetledi
Green Ahn
Green Ahn@Green_Ahn·
pH gradients are central to physiology, from vesicle acidification to the acidic tumor microenvironment. But how do we program proteins to respond to pH? In our new preprint biorxiv.org/content/10.110…, we developed computational methods to rationally design pH-sensitive binders. 🧵
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Ariax Bio
Ariax Bio@AriaxBio·
FreeBindCraft brings open-source protein design to everyone. By replacing PyRosetta with MIT/BSD-licensed alternatives, BindCraft has been freed from its licensing constraints. Available now on Ariax! Read our announcement at ariax.bio/resources/free…
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Ariax Bio
Ariax Bio@AriaxBio·
Mosaic is an exciting new open-source protein binder design tool that uses back-propagation across additional models beyond AF2. It performs similarly to BindCraft, which is a big accomplishment- congrats to the team!
Brian Naughton@btnaughton

Great blogpost by Nick Boyd and Sam Guns from Escalante Bio (posted on the other site!) blog.escalante.bio/minibinder-des… They introduce mosaic for binder design, and show some impressive results, with 7/10 and 8/10 binders working for two targets! github.com/escalante-bio/…

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