We were keep getting more and more requests for proteomics analysis for big batch of samples so we managed to install timsTOF pro 2 at our core facility and now we are ready for more MS analysis.
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PCF-OUS Oslo
41 posts
PCF-OUS Oslo
@PCFOUSOslo
Proteomics core facility Oslo, Immunology, Phosphoproteomics, Targeted proteomics
Oslo Katılım Ekim 2019
161 Takip Edilen133 Takipçiler
@ypriverol @pride_ebi pride has problem now. no one from our lab is able to login
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The @pride_ebi submission system will experience disruptions from August 16th to 18th due to scheduled system maintenance. While validations and submissions may be delayed, data deposition will remain unaffected.
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Christopher Carroll@Carroll_C_J
Check out our study with @CBJacksonLab &Battersby lab demonstrating the requirement of supernumerary proteins of the human #mitochondrial #ribosome in mitochondrial protein synthesis and the unique role for mS37. @StGeorgesUni @SGUL_Genetics @helsinkiuni biorxiv.org/content/10.110…
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PCF-OUS Oslo retweetledi
How can you predict kinase activity in phosphoproteomic data? This database allows you to do this, even for poorly annotated kinases. Read more in this new paper: doi.org/10.1021/acs.jp…”
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#TeamMassSpec @FemalesInMS I need your help with gathering a list of outstanding women scientists in proteomics, at senior and junior level, and from diverse research areas, technology, biology, clinical, computational etc.
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PCF-OUS Oslo retweetledi
Leutert et al. provide an overview of the basic modes of #PTM crosstalk, the proteomic methods to elucidate PTM crosstalk, and approaches that can inform about the functional consequences of #PTMcrosstalk ― @UW @MarioLeutert @juditvr @sam_entwisle
mcponline.org/article/S1535-…
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Interested in MS based antibody analysis. Please read this Review published in collaboration with our core facility!!
GreiffLab 💻🔬💊@victorgreiff
Very happy to see that our review on "Progress and challenges in mass spectrometry-based analysis of antibody repertoires" is out in @TrendsinBiotech. sciencedirect.com/science/articl…. Led by @ISnapkov @mchernigovskaia @ATGTAC @KhangLeQuy and in collab with @PCFOUSOslo (Tuula Nyman).
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PCF-OUS Oslo retweetledi
What’s the best data-independent acquisition (DIA) workflow for your proteomics experiments? Researchers tested a standard human proteins mixture with 36 workflows including 4 different DIA windows and 6 different software tools to find out.
pubs.acs.org/doi/10.1021/ac…
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PCF-OUS Oslo retweetledi
MaxDIA is in the spotlight of @naturemethods
Many thanks to @DrArunimaSingh for this kind overview
doi.org/10.1038/s41592…
#proteomics @MPI_Biochem @maxquant @NatureBiotech
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PCF-OUS Oslo retweetledi
Announcing the release of #FragPipe 15. Improvements in all modules, including MSFragger and IonQuant. Support for TMT, SILAC, LFQ-MBR quant, FAIMS, open PTM searches, glycoproteomics, HLA/peptidomics, spectral library building for DIA analysis, and more. fragpipe.nesvilab.org
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It has been amazing week! PCF prepared more than 400 proteomics samples in week. We have developed high throughput sample preparations pipeline. If you want to investigate outcome of your drug or gene editing screen at protein level. We can help you with that. @sachinPCFOUS
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PCF-OUS Oslo retweetledi
Read about three new @BrukerMassSpec instruments just installed at the NAPI core facilities @unioslo_mn @UniOslo_MED/@Oslounivsykehus, and @UniNMBU. Exciting new investments that will benefit many projects. Thanks to @forskningsradet for funding. bit.ly/3jOzTKQ
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Very productive day, installation process is much more faster than expected. Most difficult part was decide this amazing things a name. Finally, we named it Hilton II ( in-house name)@napi_norway @sachinPCFOUS @jrbrtsn
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We @PCFOUSOslo are adding new @BrukerMassSpec MS instrument to our PCF facility. Installation start today and we are looking forward to use it in coming weeks👏👏@sachinPCFOUS @napi_norway
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PCF-OUS Oslo retweetledi
Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant | buff.ly/2M02S1q #proteomics
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Very good start of new year! Good collaboration between @stamnaes and our proteomics core facilities @PCFOUSOslo @sachinPCFOUS @napi_norway
Jorunn Stamnæs@stamnaes
Laser capture microdissection combined with quantitative MS-based #proteomics of #celiac intestinal epithelium reveals low-level inflammation in patients that respond strongly to gluten🌾🍞 bit.ly/3nfd57b @JCoDiRC @PCFOUSOslo
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PCF-OUS Oslo retweetledi
We developed a scalable, quantitative and ultra-high sensitivity workflow for true single cell proteome analysis - one by one. Single cells have a stable proteome but not transcriptome. Great collaboration with @Bruker @EvosepBio @fabian_theis. Preprint: rb.gy/l4q32n
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BOOST pTyr quantification
Molecular & Cellular Proteomics@molcellprot
"The BOOST strategy can potentially be applied in analyses of other PTMs here treatments that broadly elevate the levels of those modifications across the #proteome are available." Paper in Press: " TMT PV BOOST channel expands pTyr quantitation depth" bit.ly/2wyovOQ
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