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I’m excited to announce that a project I’ve worked on in @LabSonnenburg in @StanfordBiosci to better understand the diversity of the human gut microbiome is now available on @biorxivpreprint! 🧵 1/12 doi.org/10.1101/2022.0…
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Bryan Merrill
197 posts
Bryan Merrill
@bryan_d_merrill
Bioinformatics Scientist @NuancedHealth, @LabSonnenburg and @StanfordBiosci alum (views my own)
Monrovia, CA Katılım Temmuz 2020
2.2K Takip Edilen355 Takipçiler
Bryan Merrill retweetledi
Thank you for the love! We've received thousands of heartfelt birthday messages for President Carter, and it truly means the world to us! Watch some of our favorites below then share your own warm wishes, stories, or birthday greetings here: bit.ly/3PW9jBp #JimmyCarter99
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Bryan Merrill retweetledi
The peer-reviewed geNomad manuscript is now in @NatureBiotech Big thanks to all involved and the reviewers for making this happen!
nature.com/articles/s4158…
Antonio Camargo@apcamargo_
Do you need to identify viruses or plasmids in sequencing data? geNomad can help you with that 😃 🚨 Preprint alert!
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Bryan Merrill retweetledi
Very proud of @jgi ‘s new tool #geNomad to identify #plasmids and #virus, developed by @apcamargo_ and team including @simroux_virus and @MicrobiomeData. New era for #MGE discovery. nature.com/articles/s4158…
National Microbiome Data Collaborative@MicrobiomeData
Researchers at @jgi have developed geNomad, a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. Learn more about geNomad in our most recent blog post: buff.ly/3t82Jyt (@kyrpides, @apcamargo_ @simroux_virus)
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Bryan Merrill retweetledi
🎉🧹 The #tidyomics ecosystem is official!
Into #omic data analysis? Spanning #Seurat @Bioconductor #SCE, #SE, #GRanges, #Citometry?
Now, just use #tidyverse !
Co-led with @mikelove and @TonyPapenfuss @WEHI_research #singlecell
The preprint biorxiv.org/cgi/content/sh…
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Bryan Merrill retweetledi
Affirmative action was never a complete answer in the drive towards a more just society. But for generations of students who had been systematically excluded from most of America’s key institutions—it gave us the chance to show we more than deserved a seat at the table.
In the wake of the Supreme Court’s recent decision, it’s time to redouble our efforts.
Michelle Obama@MichelleObama
I wanted to share some of my thoughts on today's Supreme Court decision on affirmative action:
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Bryan Merrill retweetledi
I wanted to share some of my thoughts on today's Supreme Court decision on affirmative action:
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Bryan Merrill retweetledi
Excited to see our @CellCellPress Resource article out in print today: "Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes." doi.org/10.1016/j.cell… . This article presents a deep dive into the impact of industrialization on the gut microbiome (1/5)
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Bryan Merrill retweetledi
M Carter, @MattagenOlmics, @bryan_d_merrill and @GutBugs2 team members have generated a fantastic resource for the metagenomics community. Data available publicly. Use the data responsibly. Lots of novel insights yet to emerge from this dataset. Glad to make a small contribution.
Matt Olm@MattagenOlmics
Excited to see our @CellCellPress Resource article out in print today: "Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes." doi.org/10.1016/j.cell… . This article presents a deep dive into the impact of industrialization on the gut microbiome (1/5)
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Bryan Merrill retweetledi
Out now in @CellCellPress:
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes
By Matthew Carter, Matthew Olm, Bryan Merrill, Erica Sonnenburg, Justin Sonnenburg & colleagues
@MattagenOlmics @bryan_d_merrill @LabSonnenburg
cell.com/cell/fulltext/…
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Bryan Merrill retweetledi
Excited to share our work using phages to identify bacterial pathogens in sepsis. Because phages are highly specific for their bacterial hosts, they offer strain-level resolution that could enhance cell free DNA diagnostics
nature.com/articles/s4156…
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Bryan Merrill retweetledi
Our collaboration with Yingfei Ma's group on gut phage culturomics is published in Cell Host&Microbe! The Gut Phage Isolates Collection (GPIC) expands the diversity of cultured gut phages and provides a valuable resource for human microbiome engineering.
cell.com/cell-host-micr…
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Bryan Merrill retweetledi
Today we report that an engineered skin bacterium, swabbed gently on the head of a mouse, can unleash a potent immune response against a distant tumor. @yerinchen led the charge w/ help from @DjenetBousbaine, @VeinbachsA, @BelkaidLab. @ScienceMagazine 1/26
science.org/doi/10.1126/sc…
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Bryan Merrill retweetledi
My first first-author paper is out on biorxiv! Are you curious about how diet influences which bacteria thrive in our gut microbiome? Check it out here: biorxiv.org/content/10.110…. Quick summary (and a dance version!) below 1/
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Bryan Merrill retweetledi
Do you need to identify viruses or plasmids in sequencing data? geNomad can help you with that 😃
🚨 Preprint alert!
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Bryan Merrill retweetledi
🚨‼️🚨Our strain-resolved approach in assessing well-to-well contamination is finally out in
@MicrobiomeJ
microbiomejournal.biomedcentral.com/articles/10.11…
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Bryan Merrill retweetledi
Really pleased to share that our paper on Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome is now accepted at eLife. This work is co-authored with Naima Madi, @daisywchen, @_rwolff, and @bjesseshapiro (1/n)
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Bryan Merrill retweetledi
For people asking how to help.🙏 Thank you.
I can recommend this campaign by @tphilanthropy. It’s an established US NGO with a track record and on the ground presence. I know their work.
Devastating. So many millions affected in harsh winter conditions.
donate.tpfund.org/campaign/tpf-g…
Turkish Philanthropy@tphilanthropy
Please join us in supporting TPF's relief and recovery efforts in Turkiye by donating at donate.tpfund.org/campaign/gazia… #gaziantep #antep #earthquake #earthquakerelief #disasterrelief #DepremiOldu #gaziantepdepremi #AFET #turkiyeearthquake #gecmisolsunturkiye #Turkiye
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@apopetosis @Stanford No, that's awful! This happened to us (and several friends) a few years back, when we lived in an EV lowrise. Housing let us occupy a nearby unit while they did repairs AND gave us free dining hall meals for a week. You deserve no less!
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I am thrilled to share that I have been awarded the prestigious @Princeton Presidential Postdoctoral Fellowship, which I have gladly accepted. My appointment starts September 1, 2023.
Till then, best wishes to me for thesis writing!
#Princeton #fellowship #careerupdate
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Bryan Merrill retweetledi
Our new work is out in @GlobalHealthBMJ today. This is the work of dozens of teams across 12 countries. Here we show the clear excess risk associated with COVID-19 in pregnancy. Here’s what we found and how we did it.🧵
gh.bmj.com/cgi/content/fu…
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