Dr. Jasmine Plummer 👩🏻‍🔬🧬🇨🇦🇺🇸

Glad to share our recent publication, DISSECT, a cell segmentation model integrating cytological images with spatial transcriptomic profiles, which improves spatial single-cell transcriptome reconstruction. nature.com/articles/s4358…

The Encyclopedia of DNA Elements | from The ENCODE Project Consortium biorxiv.org/content/10.648…

Online Now: Spatial multi-omics landscape of colorectal cancer macro- and micrometastases dlvr.it/TTSDxl

Nature research paper: Chromatin landscape and epigenetic heterogeneity of acute myeloid leukaemia go.nature.com/4f5QF5l

Over the past few months, we've been rewriting core workflows in Seurat with coding agents to improve speed and scalability. By moving steps from R to C++ and optimizing code, we've seen huge improvements - in some cases 10-fold and above - with identical outputs. (1/)

🤩 spatial panoramic in vivo CRISPR screen via Perturb-DBiT 🤩 Excited to share our collaborative work with @sidichen lab and many outstanding collaborators, now published in Nature Biotechnology! nature.com/articles/s4158…

Excited to share that our collaborative work with Prof. Chuan He’s team at the University of Chicago that developed the first spatial RNA modification sequencing technology (m6A-ARTR-DBiT) has been published in @naturemethods 🥳🥳 nature.com/articles/s4159…

Dissecting the cellular architecture of breast cancer brain metastases reveals prognostically distinct immune landscapes dlvr.it/TSz5Qh

A central limitation of cellular barcoding analyses has been the loss of native spatial context. With @insitubiology, we developed an adaptable platform for multiclonal lineage analysis that links clonal history to spatially resolved gene expression. cell.com/cell-stem-cell…

Democratizing the spatial view: #STAMP technology from an analytical perspective Souresh Poudel Jasmine Plummer Doug Green Felipe Segato Dezem sciexplor.com/exo/articles/E…

Artificial intelligence in bioinformatics: a survey #bioinformatics #AI #MachineLearning doi.org/10.1093/bib/bb…

Nature research paper: Acquired genetic and cell-state changes in IDH-mutant glioma progression go.nature.com/4fJnCXp

CellClick: an interactive platform for adjustable and accurate cell type annotation in single-cell and spatial omics data biorxiv.org/content/10.648…

Online Now: Clonal lineage tracing of innate immune cells in human cancer dlvr.it/TStGjW

Exciting breakthrough technology from the lab, now live in @CellCellPress ! Instead of cutting the genome where proteins bind (e.g., Cut&Tag), D&D-seq scars the DNA with a deaminase, allowing single cell genome mapping of TFs and chromatin remodellers!

Stromal barriers to therapeutic antibody delivery in human solid tumors @NatureBiotech @GuolanLu @Stanford @VanderbiltU @EbenRosenthal @GarryPNolan nature.com/articles/s4158…

🤖 #ArtificialIntelligence 🏥 #PrecisionMedicine 🧬#VelazquezVillarrealLab 🚀 Honored to present TODAY at the #FOGBoston2026 Festival of Genomics Biodata and #ArtificialIntelligence 2026! @FLGenomics @FoGenomics #FOG2026 #FOG #FOGBoston #FOG26 #FestivalOfGenomics #Genomics

The biggest breakthroughs in biodata and AI don't wait around, and neither should YOU. Day 2 is starting at The Festival of Genomics, Biodata & AI! Last chance to catch the keynotes & connect with the industry live! Get your pass here: hubs.la/Q044gKgK0 #FOGBoston

A multimodal perturbation atlas of 1,000 pooled CRISPR knockouts in A549 cells, profiled by fluorescence microscopy (39 live, 13 fixed markers), label-free phase imaging of the same live cells, and single-cell RNA sequencing (scRNA-seq) Totaling ~57 million single-cell profiles Preprint: biorxiv.org/content/10.648…

New preprint alert! 🚀 Across 60 human cancer cell lines spanning 20 cancer types, single-cell RNA+ATAC reveals pan-cancer cell-state heterogeneity, core gene-regulatory networks, and an EMT axis conserved across tissue origins. Huge congrats to first author @xu_zxu, who recently defended his PhD, and Aileen Ugurbil from our lab @RockefellerUniv! biorxiv.org/cgi/content/sh…