Hazel Dilmore retweetledi
Today we report a detailed map of interactions between the immune system and the gut microbiome. @MicrobiomeTcell led the charge w/ help from Aishan Zhao and Kat Atabakhsh. @Nature 1/40
nature.com/articles/s4158…
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Hazel Dilmore
20 posts
Hazel Dilmore
@hazeldilmore
Legally known as Amanda. PhD student @KnightLabNews @UCSDBMS. Microbiome multi-omics & data science 🧬👩🏻💻
San Diego, CA Katılım Ocak 2022
76 Takip Edilen57 Takipçiler
Hazel Dilmore retweetledi
The microbeMASST preprint is available online and we could not be more excited! Thanks to the metabolomics community for continuously depositing #opendata, this wouldn't have been possible without you! biorxiv.org/content/10.110…
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Hazel Dilmore retweetledi
A team led by researchers from CMI faculty member Siavash Mirarab's lab is proud to unveil uDance, a novel algorithm to infer phylogenetic trees, in an article published today by Nature Biotechnology. cmi.ucsd.edu/2023/07/27/eff…
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Hazel Dilmore retweetledi
@KnightLabNews (@UCSDMedSchool / @UCSDJacobs) is excited to announce a new release of Greengenes in @NatureBiotech (nature.com/articles/s4158…). With this release, we provide a single taxonomy and phylogeny unifying 16S and shotgun metagenomic analyses!
A thread (1/n)
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Hazel Dilmore retweetledi
Our ASD-microbiome meta-analysis is finally out!
nature.com/articles/s4159…
There were many contributions including GG2 that enabled resolving batch effects across cohorts, across 16S/shotgun data and many omics levels to analyze 15 ASD studies
@SFARIorg @SimonsFdn @FlatironCCB
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We just published a review paper on the skin microbiome! Check it out here: frontiersin.org/articles/10.33…
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Watched this review come to life at our dining room table!! Congrats @rach_mcmillan_!
authors.elsevier.com/c/1glCc3IrbEYm…
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Cool new resources from my hiking partner! 🥾 Proud of you!! @RuthElgamal
Ruth Marise@RuthElgamal
We created an integrated map of scRNA-seq data from 65 non-diabetic, Aab+, T1D and T2D pancreatic islets as a community resource. A thread describing the publicly available tools we generated, all available at isletgenomics.org @kjgaulton 🧵... 1/n biorxiv.org/content/10.110…
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Hazel Dilmore retweetledi
OUT NOW: A multi-omics view of Earth's microbiomes reveals microbial and metabolite diversity by @ShroomScience @earthmicrobiome @KnightLabNews & co nature.com/articles/s4156…
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Hazel Dilmore retweetledi
Exactly, if we are not controlling for host #circadian rhythm time in #microbiome studies when performing experiments, it is like trying to measure sea level rise while not knowing that tides or waves exist. @KnightLabNews @Zarrinparlab
Amir Zarrinpar@Zarrinparlab
Why doesn't mouse #microbiome research #replicate between labs? One reason: few labs report time of sample collections. Changing sample collection time by just 4 hours can lead to completely different results. #circadianrhythms #replication #Integrity biorxiv.org/content/10.110…
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@DirtySci @medrxivpreprint it was a little over 24 hours for me. much quicker than i anticipated!
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Hazel Dilmore retweetledi
📡 Big day today!
Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae.
Portal: zebrahub.ds.czbiohub.org
Dataset: doi.org/10.6084/m9.fig…
1/n
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Hazel Dilmore retweetledi
The gut microbiota composition changes during alcohol consumption. A decade ago, we set out to explore how this small concentration of ethanol could alter the microbiome. The fruit of that work is out now in @NatureComms nature.com/articles/s4146…
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Hazel Dilmore retweetledi
The richness of untargeted mass spectrometry data is a blessing and a curse. We created MassQL to help mass spectrometry users to sift through this deluge of data and find exactly the molecules and classes of molecules they were looking for by defining their own MS data searches.
bioRxiv@biorxivpreprint
A Universal Language for Finding Mass Spectrometry Data Patterns biorxiv.org/cgi/content/sh… #bioRxiv
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Hazel Dilmore retweetledi
We are now monitoring monkeypox in San Diego wastewater as well as a part of our SEARCH collaboration with @scrippsresearch @UCSDHealth @KnightLabNews @SDCountyHHSA @UCSanDiego
Link: searchcovid.info/dashboards/was…
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Hazel Dilmore retweetledi
So excited that this paper is finally out! These techniques were the basis of my thesis project, which should be submitted soon. @BayleeRussell5 @Zarrinparlab @KnightLabNews @alansaghatelian @CellCellPress cell.com/cell/fulltext/…
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Hazel Dilmore retweetledi
The gut microbiota though all stages of life.
#MedTwitter #microbiome #GITwitter #health
nature.com/articles/s4157…
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Hazel Dilmore retweetledi
Our review on the microbiome (bacteria, virus, archaea, and fungi) across life is out! Reviewing this broad topic put into perspective how much we know and how much more is waiting to be discovered. Thanks to @hazeldilmore (co-first) @Zach_Burcham @DirtySci @KnightLabNews
Nature Reviews Microbiology@NatureRevMicro
Microbiota succession throughout life from the cradle to the grave rdcu.be/cSNc6 The human microbiota can undergo dramatic changes during different phases of life. In this Review, Knight & co discuss the microbiota successions that occur from the cradle to the grave.
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@sabeenieweenie surely socal will lure u back with our superior lassis
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