Biomni

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Biomni

Biomni

@ProjectBiomni

The first IBE - collaborative agents designed for biologists to make more discoveries, faster, with rigor, and at scale. Built by @phylo_bio Stanford Spin-out

Katılım Haziran 2025
23 Takip Edilen1.7K Takipçiler
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Yuanhao Qu
Yuanhao Qu@YuanhaoQ·
Building better evaluation for biology is hard, but at Phylo (@phylo_bio) we think it's one of the most important problems to solve right now. The community has made real progress building benchmarks for biology agents. But most check only the final answer, which tells you little about where agents struggle or whether the process was sound. Today we're introducing BiomniBench, the first trace-based real-world evaluation for AI agents in biology. Instead of just checking the final output, it also evaluates the analytical process step by step: data handling, method selection, statistical rigor, and biological interpretation. This is how biologists actually evaluate each other's work, and we think it should be how we evaluate agents too. We share preliminary results on BiomniBench-DataAnalysis-v0, where we compare Biomni Lab against other general-purpose and domain-specific agents, as well as two groups of human scientists from the pharmaceutical industry. Biomni Lab leads all agents and performs comparably to senior pharmaceutical scientists. We also evaluated on BixBench, where Biomni Lab leads ahead of all other agents. We learned quite a lot from this exercise, including building a verified subset, which we discuss in detail in the blog post. It's not perfect, but we believe it's a meaningful step toward evaluation that helps us diagnose and improve agent capabilities, and better represent the real progress AI agents are making in empowering biologists' day-to-day work. We will be open-sourcing BiomniBench and looking for biologists, research institutions, pharma companies, and agent developers to contribute. Stay tuned. Blog post: phylo.bio/blog/evaluatin…
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Ryo Komorizono
Ryo Komorizono@RyoKomorizono·
Early access participantとして使用していたが、ほんとにすごい。例えば「○○タンパク質に結合するバインダーペプチドを設計して」と指示するだけでアミノ酸配列、立体構造(PDBになかったら予測も)、ポケット予測、ペプチド設計(修飾も)を一気に実行する。30分で。 @ProjectBiomni @phylo_bio
Kexin Huang@KexinHuang5

Today we’re launching Phylo, a research lab studying agentic biology, backed by a $13.5M seed round co-led by @a16z and @MenloVentures / Anthology Fund @AnthropicAI. We’re also introducing a research preview of Biomni Lab, the first Integrated Biology Environment (IBE), where we’re imagining a new way biologists work. Biomni Lab uses agents to orchestrate hundreds of biological databases, software tools, molecular AI models, expert workflows, and even external research services in one workspace, supporting research end-to-end from question to experiment to result. Agents handle the mechanics, while you define the question, then review, steer, and decide. Scientists end up spending more time on science: asking questions, understanding mechanisms, and eliminating diseases. Phylo (@phylo_bio) is a spin-out of @ProjectBiomni, where we will maintain the open-source community and push open-science research. I’m grateful to continue building with my co-founders @YuanhaoQ @jure @lecong and the dream founding team @serena2z @TianweiShe @huangzixin20151 @gm2123 @margaretwhua @malayhgandhi. We’re also fortunate to be advised by leading scientists @zhangf, Carolyn Bertozzi, and @fabian_theis, and supported by an amazing group of investors including @JorgeCondeBio @zakdoric Matt Kraning @ZettaVentures @dreidco @conviction @saranormous @svangel @valkyrie_vc and others. Biomni Lab is available for free today: biomni.phylo.bio Learn more in our launch post: phylo.bio/blog/company-f… We are also hosting launch events - join us at South San Francisco: luma.com/n8k8qb0n Virtual: luma.com/l5ryjaij We’re also hiring! phylo.bio/careers

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Biomni@ProjectBiomni·
Excited to announce our inaugural blog post - with @Ginkgo to analyze complex cell painting analysis - the agents are now capable of tackling more specialized tasks!
Kexin Huang@KexinHuang5

We are excited to partner with @Ginkgo Datapoints to demonstrate how Biomni can accelerate functional genomics analysis. Biomni Lab analyzed 10+ transcriptomic and Cell Painting datasets from the Ginkgo Datapoints (GDPx) collection in hours instead of weeks, with results validated by Ginkgo scientists. Try it today at biomni.phylo.bio and learn more at: phylo.bio/blog/ginkgo-bi… @jrkelly

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Biomni
Biomni@ProjectBiomni·
Excited to share the next phase of Biomni project! Try out today at biomni.phylo.bio
Kexin Huang@KexinHuang5

Today we’re launching Phylo, a research lab studying agentic biology, backed by a $13.5M seed round co-led by @a16z and @MenloVentures / Anthology Fund @AnthropicAI. We’re also introducing a research preview of Biomni Lab, the first Integrated Biology Environment (IBE), where we’re imagining a new way biologists work. Biomni Lab uses agents to orchestrate hundreds of biological databases, software tools, molecular AI models, expert workflows, and even external research services in one workspace, supporting research end-to-end from question to experiment to result. Agents handle the mechanics, while you define the question, then review, steer, and decide. Scientists end up spending more time on science: asking questions, understanding mechanisms, and eliminating diseases. Phylo (@phylo_bio) is a spin-out of @ProjectBiomni, where we will maintain the open-source community and push open-science research. I’m grateful to continue building with my co-founders @YuanhaoQ @jure @lecong and the dream founding team @serena2z @TianweiShe @huangzixin20151 @gm2123 @margaretwhua @malayhgandhi. We’re also fortunate to be advised by leading scientists @zhangf, Carolyn Bertozzi, and @fabian_theis, and supported by an amazing group of investors including @JorgeCondeBio @zakdoric Matt Kraning @ZettaVentures @dreidco @conviction @saranormous @svangel @valkyrie_vc and others. Biomni Lab is available for free today: biomni.phylo.bio Learn more in our launch post: phylo.bio/blog/company-f… We are also hosting launch events - join us at South San Francisco: luma.com/n8k8qb0n Virtual: luma.com/l5ryjaij We’re also hiring! phylo.bio/careers

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Kexin Huang
Kexin Huang@KexinHuang5·
Today we’re launching Phylo, a research lab studying agentic biology, backed by a $13.5M seed round co-led by @a16z and @MenloVentures / Anthology Fund @AnthropicAI. We’re also introducing a research preview of Biomni Lab, the first Integrated Biology Environment (IBE), where we’re imagining a new way biologists work. Biomni Lab uses agents to orchestrate hundreds of biological databases, software tools, molecular AI models, expert workflows, and even external research services in one workspace, supporting research end-to-end from question to experiment to result. Agents handle the mechanics, while you define the question, then review, steer, and decide. Scientists end up spending more time on science: asking questions, understanding mechanisms, and eliminating diseases. Phylo (@phylo_bio) is a spin-out of @ProjectBiomni, where we will maintain the open-source community and push open-science research. I’m grateful to continue building with my co-founders @YuanhaoQ @jure @lecong and the dream founding team @serena2z @TianweiShe @huangzixin20151 @gm2123 @margaretwhua @malayhgandhi. We’re also fortunate to be advised by leading scientists @zhangf, Carolyn Bertozzi, and @fabian_theis, and supported by an amazing group of investors including @JorgeCondeBio @zakdoric Matt Kraning @ZettaVentures @dreidco @conviction @saranormous @svangel @valkyrie_vc and others. Biomni Lab is available for free today: biomni.phylo.bio Learn more in our launch post: phylo.bio/blog/company-f… We are also hosting launch events - join us at South San Francisco: luma.com/n8k8qb0n Virtual: luma.com/l5ryjaij We’re also hiring! phylo.bio/careers
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Jure Leskovec
Jure Leskovec@jure·
Excited to share the launch of @phylo_bio 🚀 — a research lab studying agentic biology, spun out of our open-source AI scientist @ProjectBiomni. As scientific cofounder, I’m proud of what this team has built: Biomni Lab, the first Integrated Biology Environment where agents handle the mechanics and scientists focus on questions, mechanisms, and discovery. Onward 🚀 🔬 Try it free: biomni.phylo.bio 📢 We’re hiring: phylo.bio/careers
Kexin Huang@KexinHuang5

Today we’re launching Phylo, a research lab studying agentic biology, backed by a $13.5M seed round co-led by @a16z and @MenloVentures / Anthology Fund @AnthropicAI. We’re also introducing a research preview of Biomni Lab, the first Integrated Biology Environment (IBE), where we’re imagining a new way biologists work. Biomni Lab uses agents to orchestrate hundreds of biological databases, software tools, molecular AI models, expert workflows, and even external research services in one workspace, supporting research end-to-end from question to experiment to result. Agents handle the mechanics, while you define the question, then review, steer, and decide. Scientists end up spending more time on science: asking questions, understanding mechanisms, and eliminating diseases. Phylo (@phylo_bio) is a spin-out of @ProjectBiomni, where we will maintain the open-source community and push open-science research. I’m grateful to continue building with my co-founders @YuanhaoQ @jure @lecong and the dream founding team @serena2z @TianweiShe @huangzixin20151 @gm2123 @margaretwhua @malayhgandhi. We’re also fortunate to be advised by leading scientists @zhangf, Carolyn Bertozzi, and @fabian_theis, and supported by an amazing group of investors including @JorgeCondeBio @zakdoric Matt Kraning @ZettaVentures @dreidco @conviction @saranormous @svangel @valkyrie_vc and others. Biomni Lab is available for free today: biomni.phylo.bio Learn more in our launch post: phylo.bio/blog/company-f… We are also hosting launch events - join us at South San Francisco: luma.com/n8k8qb0n Virtual: luma.com/l5ryjaij We’re also hiring! phylo.bio/careers

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Kexin Huang
Kexin Huang@KexinHuang5·
So much of biomedical research rests on tacit knowledge—unwritten and invisible to LLMs—causing agents to underperform. The Biomni Open Know-How Catalogue bridges that gap: a curated library of human expertise that Biomni agents use intelligently on the fly, with dramatic gains. Build together: biomni.stanford.edu/blog/biomni-kn…
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Yuanhao Qu
Yuanhao Qu@YuanhaoQ·
This is one of the most effective ways to make your @ProjectBiomni agent super good! Teach your Biomni agent by adding your know-how. agent can intelligently follow your expertise on all related tasks. See our example about designing CRISPR sgRNAs: biomni.stanford.edu/blog/biomni-kn…
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Biomni
Biomni@ProjectBiomni·
Biomni v0.0.8 is live! 🎉 🌟NEW: Gradio UI - Interactive web interface for Biomni agents, now open source! 🌟 Other features: 🧪ChEMBL, UniChem, QuickGO & DailyMed database integrations 📜Transcripformer & Arc State embeddings 🔎GPT-5 model support 👉Try it here: github.com/snap-stanford/…
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CL • Le Cong
CL • Le Cong@lecong·
Super exciting to be partnering with Nebius on our recent AI agents and benchmark work, building next generation infra in AI4Science, and wonderful to share progress on CRISPR-GPT, drug screening agent, and more next week. Join me with Artem from Nebius and talented student Yuanhao (Jerry), who led many of these work in our group. #ai #CRISPR #Genomics #GPU #Infrastructure
Nebius@nebiusai

From Code to Cure Webinar🧬 Join our own @ElmuratovArtem and @Stanford’s @lecong on Oct 23 at 9 AM PDT for a webinar exploring how AI agents are accelerating biomedical discovery from CRISPR-GPT to RNAGenesis. Sign up: nebius.com/events/webinar… #AI #Biotech #Webinar

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Biomni@ProjectBiomni·
🚀 Biomni v0.0.7 is live! New features: 📜 PDF export for agent chats 🦠 SOTA cell type transfer algorithms 🔬LazySlide pathology support 🔍Claude web search 🌟Bioimaging pipeline tools 🧬Gene conversion & ESM embeddings 🪴Glycoengineering capabilities Plus improved commercial licensing & data handling! 👉 Try it here: github.com/snap-stanford/…
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owl
owl@owl_posting·
this guys calenders gotta be crazy
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