Sandeep Kaur

Just published👍I’m glad to share: Genomic evidence of two-staged transmission of the early seventh cholera pandemic | Nature Communications ⁦@LanlabUnsw⁩ #cholera nature.com/articles/s4146…

Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing. biorxiv.org/cgi/content/sh… #bioRxiv

Global genomic dissection of antimicrobial resistance in Salmonella Typhimurium biorxiv.org/cgi/content/sh… #biorxiv_micrbio

Our lab is hiring two Research Assistants. A Computer Scientist and a Biomedical Scientist. Please help us spread the word and apply before Nov. 29th.

How big are the cells? Microorganisms in perspective

New paper from @LanlabUnsw, in @EMI_Journal tandfonline.com/doi/full/10.10…. We described the global genomic epidemiology and evolution of B. #pertussis with >6500 isolates using MGT. @mjohnpayne @AliceZhengXu @compbiosan @sophie_octavia Public database -> mgtdb.unsw.edu.au/pertussis/. 1/6

My last chapter of PhD work in @LanlabUnsw.

New preprint from @LanlabUNSW! biorxiv.org/content/10.110… We describe large and small scale trends in global #Bordetella #pertussis populations using a standardised multilevel genome typing (MGT) nomenclature and public database mgtdb.unsw.edu.au/pertussis/ @LanlabUnsw #microbialgenomics

My latest research on Genomic Epidemiology of Vibrio cholerae O139 is published on Emerging Infectious Diseases journal. Thank you ⁦@LanlabUnsw⁩ ⁦@mjohnpayne⁩ ⁦@DazhiJin⁩ ⁦@UNSWBABS⁩ #cholera is my favorite forever 😄 wwwnc.cdc.gov/eid/article/28…

Meeting (almost) all our brilliant @AusPathoGen Program partners today for our All Partners Symposium in sunny Sydney!

ShigEiFinder version 1.3 released! Includes fixes and updates that resolve issues raised in this excellent recent paper by @iman__yassine and @weill_xavier nature.com/articles/s4146…. Accuracy now over 92% in routine surveillance! @LanlabUnsw #Shigella #EIEC. github.com/LanLab/ShigEiF…

@TrumanLab Pretty much all of them do (self paper plug bit.ly/3uKHuRU)

first talk in #vizbi2022 #rna session from @athmapai - explaining mrna splicing and fidelity

—Hey #AI, I'd like to design a way to accurately diagnose >1,900 viral species in <2 hours —OK, here you go nature.com/articles/s4158… @NatureBiotech @PardisSabeti @haydenmetsky @broadinstitute

New Australian #bordetella #pertussis #genomics preprint alert! @LanlabUnsw @AliceZhengXu @sophie_octavia biorxiv.org/content/10.110…

Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping, from @zxmXiaomei @mjohnpayne @LanlabUnsw and colleagues in #MGen doi.org/10.1099/mgen.0…

Interestingly the co-occurrence of Q498R and N501Y (see #E504&(-16,-70,-77)&619%25" target="_blank" rel="nofollow noopener">aquaria.app/SARS-CoV-2/S/7…) which probably contributes to better binding between #ACE2 and #SARSCoV2, had been structurally investigated for increasing virulence, before the discovery of #omicron.

For rapid access to structural information about the variations in #omicron, we (lab of @seaniod) have created an info graphic: aquaria.app/omicron Many of the variations are present in structures of #SARSCoV2 or #SARSCoV. Click on the number of structures to view them.

Check our recent paper about genomic characteristics of the emerging foodborne pathogen #Escherichia #albertii from @LanlabUnsw in @micgenomics. About population structure, #virulence genes distribution, the great concern of #MDR. #plasmids #prophages microbiologyresearch.org/content/journa…

New from @zxmXiaomei and @LanlabUnsw in @micgenomics! Specific gene marker sets to identify and distinguish Shigella and EIEC clusters and serotypes. microbiologyresearch.org/content/journa…. Applied in ShigEiFinder, an online and command line tool (>99% accurate): github.com/LanLab/ShigEiF….