Clarity Protocol@clarity_proto
Here is a little more depth on what we do and why:
Clarity is an autonomous research system for protein folding and peptide design. One pipeline, continuous compute, public output.
The problem Clarity is solving
- Bringing a new drug to the market, on average, has about a $1B median cost, takes 12 years of time, and only about 10% of preclinical candidates ever reach humans. Most of that $1B cost is spent to find out a candidate doesn't work.
Why neurodegenerative disease?
- First of all, this is the goal I, @333absent333, was determined to reach before this project went public. This is a personal matter to me and what got the ball rolling in the first place.
- Regarding Alzheimer's, roughly 99% of drug trials fail. For the past two decades, there has only been a 2% success rate out of the hundreds of potential new compounds developed.
- During this time, we saw giants like Roche spend $11B in R&D in a single year (2018) and watched two phase III Alzheimer's candidates collapse. Eleven billion dollars. The problem isn't a lack of money, it's a lack of good shots on goal.
Why peptides?
- Peptides are short, targeted, and the body knows how to recycle them. The weakness here is that their oral bioavailability is <1-2%, and the half-life is often minutes, so most never make it past biology's filters.
With that being said, you need a lot of them. And you need to filter ruthlessly.
- In Clarity's case: Alzheimer's is a misfolding disease. Peptides and proteins clumping together. There's no enzyme pocket to plug; small molecules can't compete with the interface. Peptides can.
What does Clarity do?
- Step 1:
Pick a disease-relevant protein, fold it to see its 3D structure, and find the site driving the disease. This is where a binder would have to attach to interfere.
- Step 2:
Propose new peptide sequences shaped to fit that site.
We run every candidate through a pipeline of structural, dynamic, and safety filters such as: Does it bind? Is it stable? Would it survive in the body? Is it safe to put in a body? Most of these fail, the ones that pass are the shortlist.
- Step 3:
Publish every result on clarityprotocol.io. Our targets, candidates, next on queue, etc... get posted on their associated fold page.
The cost angle
A traditional preclinical campaign for a single peptide target can consist of months of wetlab time, a team, and a budget that often starts in the low seven figures. Clarity runs the upstream computational stage locally and puts candidates through rigorous testing and verification stages before determining what is worthy of being sent to a wetlab.
What's next
- Clarity is currently designing peptides for several neurodegenerative disease targets. What we have posted on the site is part of our automated schedule and research agents, but tests are also conducted on the side to help expedite the process.
- Existing peptides have been sent out for third-party testing (I wouldn't sell anything that I wouldn't trust in my own body) so that we can determine what vendor(s) to trust before opening up a shop on clarityprotocol.io (working on building tokenomics into this part)
- Once I am comfortable with the quality of the discovery pipeline, I intend on opening it up to other disease targets. As I mentioned a handful of times, neurodegenerative was the original goal and I intend on refining that first.